Variant report

Variant	rs4635214
Chromosome Location	chr13:84695682-84695683
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10871178	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11616293	0.98[ASN][1000 genomes]
rs12430930	0.96[ASN][1000 genomes]
rs3936039	0.99[ASN][1000 genomes]
rs4128156	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4575425	0.93[ASN][1000 genomes]
rs57868425	0.98[ASN][1000 genomes]
rs59108611	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59801215	0.88[ASN][1000 genomes]
rs7328302	0.93[ASN][1000 genomes]
rs7337809	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7338994	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7998092	0.99[ASN][1000 genomes]
rs9319019	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9319021	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9319023	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9531559	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9531560	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047488	chr13:84629304-84696148	Weak transcription Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1046982	chr13:84631965-84800765	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1038880	chr13:84632431-84861839	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv949402	chr13:84675752-85606846	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1035493	chr13:84683545-84779862	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv900687	chr13:84691001-84714655	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:84693600-84700600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr13:84694800-84695800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr13:84695400-84696000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr13:84695400-84696000	Enhancers	NHEK	skin
5	chr13:84695400-84696200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:84695400-84696200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr13:84695400-84696200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr13:84695400-84696600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr13:84695400-84696600	Enhancers	Dnd41	blood
10	chr13:84695600-84695800	Enhancers	Primary hematopoietic stem cells	blood
11	chr13:84695600-84696000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr13:84695600-84696000	Enhancers	Brain Germinal Matrix	brain
13	chr13:84695600-84696000	Enhancers	HMEC	breast
14	chr13:84695600-84696200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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