Variant report

Variant	rs9531559
Chromosome Location	chr13:84712384-84712385
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10871178	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11616293	0.97[ASN][1000 genomes]
rs12430930	0.95[ASN][1000 genomes]
rs3936039	1.00[ASN][1000 genomes]
rs4128156	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4575425	0.94[ASN][1000 genomes]
rs4635214	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57868425	0.97[ASN][1000 genomes]
rs59108611	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59801215	0.87[ASN][1000 genomes]
rs7328302	0.94[ASN][1000 genomes]
rs7337809	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7338994	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7998092	1.00[ASN][1000 genomes]
rs9319019	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9319021	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9319023	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9531560	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046982	chr13:84631965-84800765	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1038880	chr13:84632431-84861839	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv949402	chr13:84675752-85606846	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1035493	chr13:84683545-84779862	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv900687	chr13:84691001-84714655	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv562557	chr13:84695884-84714655	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv1044494	chr13:84705200-84897141	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	esv2561636	chr13:84711777-84713305	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:84705600-84713000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr13:84711600-84712600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr13:84711600-84712800	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr13:84711600-84714600	Enhancers	Dnd41	blood
5	chr13:84711600-84716600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr13:84711800-84712800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr13:84711800-84712800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr13:84711800-84712800	Enhancers	Primary T helper cells fromperipheralblood	blood
9	chr13:84711800-84713000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr13:84711800-84713600	Weak transcription	HMEC	breast
11	chr13:84712000-84712600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr13:84712000-84712600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr13:84712000-84712800	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr13:84712000-84712800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr13:84712000-84713600	Weak transcription	NHEK	skin
16	chr13:84712000-84714200	Enhancers	Primary hematopoietic stem cells	blood
17	chr13:84712000-84715400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr13:84712200-84712600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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