Variant report

Variant	rs4643283
Chromosome Location	chr15:34447086-34447087
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:53)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:53 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr15:34446896-34447588	A549	lung:	n/a	n/a
2	ZNF143	chr15:34446808-34447126	K562	blood:	n/a	n/a
3	SETDB1	chr15:34446368-34447342	K562	blood:	n/a	n/a
4	JUND	chr15:34446942-34447339	A549	lung:	n/a	n/a
5	ELF1	chr15:34446880-34447426	A549	lung:	n/a	n/a
6	USF1	chr15:34446779-34447469	A549	lung:	n/a	n/a
7	JUN	chr15:34446838-34447557	K562	blood:	n/a	n/a
8	SP1	chr15:34446917-34447525	HCT-116	colon:	n/a	n/a
9	JUND	chr15:34446972-34447508	HCT-116	colon:	n/a	n/a
10	TCF12	chr15:34446822-34447227	A549	lung:	n/a	n/a
11	FOSL1	chr15:34446887-34447545	HCT-116	colon:	n/a	n/a
12	SP1	chr15:34446707-34447586	A549	lung:	n/a	n/a
13	JUND	chr15:34447048-34447369	H1-hESC	embryonic stem cell:	n/a	n/a
14	FOSL2	chr15:34447044-34447298	HepG2	liver:	n/a	n/a
15	BACH1	chr15:34447005-34447438	H1-hESC	embryonic stem cell:	n/a	n/a
16	FOSL2	chr15:34447036-34447355	MCF-7	breast:	n/a	n/a
17	SP1	chr15:34446851-34447566	A549	lung:	n/a	n/a
18	TRIM28	chr15:34446708-34447228	K562	blood:	n/a	n/a
19	FOSL2	chr15:34447023-34447454	A549	lung:	n/a	n/a
20	EP300	chr15:34446892-34447625	A549	lung:	n/a	n/a
21	ZNF143	chr15:34446832-34447139	Hela-S3	cervix:	n/a	n/a
22	GABPA	chr15:34446979-34447469	A549	lung:	n/a	n/a
23	SETDB1	chr15:34446788-34447244	K562	blood:	n/a	n/a
24	POLR2A	chr15:34446628-34447482	U87	brain:	n/a	n/a
25	KAP1	chr15:34446469-34447326	K562	blood:	n/a	n/a
26	FOSL1	chr15:34447084-34447307	K562	blood:	n/a	n/a
27	SP1	chr15:34446873-34447599	HCT-116	colon:	n/a	n/a
28	FOS	chr15:34446883-34447452	MCF10A-Er-Src	breast:	n/a	n/a
29	FOS	chr15:34447027-34447396	MCF10A-Er-Src	breast:	n/a	n/a
30	CBX3	chr15:34446711-34447278	K562	blood:	n/a	n/a
31	MAFK	chr15:34447029-34447395	H1-hESC	embryonic stem cell:	n/a	n/a
32	EP300	chr15:34447039-34447403	HepG2	liver:	n/a	n/a
33	ATF3	chr15:34446874-34447477	A549	lung:	n/a	n/a
34	GATA3	chr15:34446599-34447600	A549	lung:	n/a	n/a
35	USF1	chr15:34446786-34447448	HCT-116	colon:	n/a	n/a
36	POLR2A	chr15:34446796-34447365	U87	brain:	n/a	n/a
37	CBX3	chr15:34446793-34447188	K562	blood:	n/a	n/a
38	FOS	chr15:34447002-34447531	MCF10A-Er-Src	breast:	n/a	n/a
39	JUND	chr15:34446904-34447541	HCT-116	colon:	n/a	n/a
40	POLR2A	chr15:34446803-34447365	U87	brain:	n/a	n/a
41	CBX3	chr15:34446765-34447308	HCT-116	colon:	n/a	n/a
42	JUND	chr15:34447082-34447346	K562	blood:	n/a	n/a
43	SETDB1	chr15:34446626-34447442	U2OS	brain:	n/a	n/a
44	FOSL1	chr15:34446871-34447588	HCT-116	colon:	n/a	n/a
45	USF1	chr15:34446780-34447530	HCT-116	colon:	n/a	n/a
46	FOSL2	chr15:34446858-34447666	A549	lung:	n/a	n/a
47	POLR2A	chr15:34446910-34447266	H1-hESC	embryonic stem cell:	n/a	n/a
48	POLR2A	chr15:34446845-34447308	H1-hESC	embryonic stem cell:	n/a	n/a
49	USF1	chr15:34446829-34447128	A549	lung:	n/a	n/a
50	CBX3	chr15:34446745-34447560	HCT-116	colon:	n/a	n/a

No data

Variant related genes	Relation type
KATNBL1	TF binding region

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10851947	0.81[AFR][1000 genomes]
rs2339367	0.96[AFR][1000 genomes]
rs6495551	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7179357	1.00[AFR][1000 genomes]
rs8031420	0.84[YRI][hapmap]
rs8035014	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035579	chr15:34363159-34501115	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34429800-34456800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr15:34431200-34453200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:34433200-34448200	Weak transcription	Gastric	stomach
4	chr15:34433400-34453200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr15:34434000-34453000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr15:34434400-34450200	Strong transcription	Fetal Muscle Trunk	muscle
7	chr15:34435800-34453000	Weak transcription	Stomach Mucosa	stomach
8	chr15:34437200-34449600	Strong transcription	Stomach Smooth Muscle	stomach
9	chr15:34438400-34453000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr15:34439000-34454600	Weak transcription	Brain Angular Gyrus	brain
11	chr15:34440000-34448400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr15:34441800-34447400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr15:34443400-34449400	Weak transcription	Fetal Brain Male	brain
14	chr15:34443400-34450600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr15:34443400-34453000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr15:34443400-34453400	Weak transcription	Colon Smooth Muscle	Colon
17	chr15:34443400-34456400	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr15:34444000-34455400	Weak transcription	Brain Anterior Caudate	brain
19	chr15:34444400-34453200	Weak transcription	Spleen	Spleen
20	chr15:34444400-34456400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr15:34444600-34449600	ZNF genes & repeats	HMEC	breast
22	chr15:34444800-34450400	ZNF genes & repeats	A549	lung
23	chr15:34444800-34453000	Weak transcription	Fetal Thymus	thymus
24	chr15:34444800-34453200	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr15:34445000-34449600	ZNF genes & repeats	NHEK	skin
26	chr15:34445200-34448800	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr15:34445200-34453000	Weak transcription	Lung	lung
28	chr15:34445400-34459600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr15:34445600-34449800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr15:34445600-34450000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
31	chr15:34445800-34448400	ZNF genes & repeats	Primary B cells from cord blood	blood
32	chr15:34445800-34449000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr15:34445800-34449400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
34	chr15:34445800-34449600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr15:34445800-34449600	Strong transcription	Right Ventricle	heart
36	chr15:34445800-34450000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr15:34445800-34455600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr15:34445800-34459400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
39	chr15:34446000-34448600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr15:34446000-34448600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr15:34446000-34449000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr15:34446200-34447200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr15:34446200-34447400	ZNF genes & repeats	Placenta	Placenta
44	chr15:34446200-34447800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
45	chr15:34446200-34447800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
46	chr15:34446200-34448000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr15:34446200-34448400	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr15:34446200-34448400	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
49	chr15:34446200-34448600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
50	chr15:34446200-34448800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell

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