Variant report

Variant	rs4646937
Chromosome Location	chr6:34848416-34848417
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:34847495..34849709-chr6:34854522..34857115,3	MCF-7	breast:
2	chr6:34839566..34841617-chr6:34847259..34849427,2	MCF-7	breast:
3	chr6:34840841..34842858-chr6:34847132..34849372,2	MCF-7	breast:
4	chr6:34842945..34852488-chr6:34852501..34858927,16	MCF-7	breast:

Variant related genes	Relation type
ENSG00000064999	Chromatin interaction
ENSG00000064995	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs28675041	1.00[ASN][1000 genomes]
rs28803510	1.00[ASN][1000 genomes]
rs35032786	1.00[ASN][1000 genomes]
rs35078643	0.90[ASN][1000 genomes]
rs4646945	0.90[ASN][1000 genomes]
rs6930932	1.00[ASN][1000 genomes]
rs7739397	1.00[ASN][1000 genomes]
rs7741166	1.00[ASN][1000 genomes]
rs7748737	1.00[ASN][1000 genomes]
rs7761573	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv885785	chr6:34404636-34874002	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv885793	chr6:34520267-34886436	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
5	esv2763967	chr6:34566255-34925463	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	nsv1020710	chr6:34607214-34890143	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
7	nsv870010	chr6:34713359-34880048	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	33 gene(s)	inside rSNPs	diseases
8	nsv1025374	chr6:34723723-34887316	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	33 gene(s)	inside rSNPs	diseases
9	nsv462905	chr6:34728253-34886436	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
10	nsv602906	chr6:34728253-34886436	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
11	nsv1028363	chr6:34733071-34859045	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
12	nsv1015792	chr6:34741917-34887316	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
13	nsv1021733	chr6:34751052-34887316	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
14	nsv1026121	chr6:34786887-34961360	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	19 gene(s)	inside rSNPs	diseases
15	nsv885797	chr6:34791027-34980601	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
16	nsv1033135	chr6:34802652-34957093	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	18 gene(s)	inside rSNPs	diseases
17	nsv508402	chr6:34840961-34951288	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34816800-34853600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:34817400-34851200	Strong transcription	Fetal Thymus	thymus
3	chr6:34818600-34853400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:34820200-34855000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:34821000-34854600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:34822800-34849400	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr6:34823000-34851600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr6:34830000-34855000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:34831400-34849400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:34834400-34849000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:34834400-34851200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:34834400-34853600	Strong transcription	Primary T helper cells fromperipheralblood	blood
13	chr6:34834600-34849800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:34834800-34850200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:34835000-34849200	Strong transcription	Duodenum Smooth Muscle	Duodenum
16	chr6:34835000-34849400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:34835000-34849400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:34835200-34848600	Strong transcription	Brain Cingulate Gyrus	brain
19	chr6:34835400-34849000	Strong transcription	Adipose Nuclei	Adipose
20	chr6:34835400-34849400	Strong transcription	Liver	Liver
21	chr6:34835800-34855200	Weak transcription	Small Intestine	intestine
22	chr6:34836600-34849200	Strong transcription	Dnd41	blood
23	chr6:34836800-34849600	Strong transcription	Duodenum Mucosa	Duodenum
24	chr6:34837000-34849000	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr6:34837000-34852000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:34837000-34852400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr6:34837400-34851200	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr6:34837600-34849200	Strong transcription	GM12878-XiMat	blood
29	chr6:34838000-34849000	Strong transcription	Primary hematopoietic stem cells	blood
30	chr6:34838000-34849200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr6:34838000-34849600	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr6:34838200-34848600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr6:34838400-34850000	Strong transcription	Cortex derived primary cultured neurospheres	brain
34	chr6:34838600-34849400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:34838800-34849000	Strong transcription	Brain Substantia Nigra	brain
36	chr6:34838800-34851200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr6:34840600-34851200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr6:34840800-34854800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:34841200-34849800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr6:34841400-34854600	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr6:34841400-34855200	Weak transcription	Fetal Heart	heart
42	chr6:34841600-34854600	Weak transcription	Fetal Kidney	kidney
43	chr6:34842400-34848600	Strong transcription	Skeletal Muscle Male	skeletal muscle
44	chr6:34842600-34848800	Strong transcription	Brain Anterior Caudate	brain
45	chr6:34842600-34849200	Strong transcription	Primary B cells from peripheral blood	blood
46	chr6:34842600-34849200	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr6:34842600-34854800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr6:34843200-34849600	Weak transcription	Lung	lung
49	chr6:34843800-34849600	Strong transcription	Placenta	Placenta
50	chr6:34844000-34849000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood

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