Variant report

Variant	rs4647375
Chromosome Location	chr9:98059866-98059867
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:98059172..98061613-chr9:98077027..98078592,2	MCF-7	breast:
2	chr9:98058741..98060444-chr9:98067413..98069103,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs4647347	1.00[AMR][1000 genomes]
rs4647353	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647456	1.00[AFR][1000 genomes]
rs4647467	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647503	1.00[AMR][1000 genomes]
rs4647538	1.00[AMR][1000 genomes]
rs4647542	1.00[AMR][1000 genomes]
rs57302938	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98046600-98063000	Weak transcription	Fetal Stomach	stomach
2	chr9:98050200-98067400	Weak transcription	A549	lung
3	chr9:98054800-98063000	Weak transcription	Lung	lung
4	chr9:98055000-98068600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:98055200-98065600	Weak transcription	Thymus	Thymus
6	chr9:98055400-98066000	Weak transcription	Fetal Muscle Leg	muscle
7	chr9:98055600-98062000	Weak transcription	Aorta	Aorta
8	chr9:98058800-98061000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:98058800-98061400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:98059000-98060200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr9:98059000-98060400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr9:98059000-98060800	Enhancers	HepG2	liver
13	chr9:98059200-98060200	Enhancers	HSMM	muscle
14	chr9:98059200-98060800	Enhancers	HMEC	breast
15	chr9:98059200-98061800	Enhancers	Liver	Liver
16	chr9:98059400-98060000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr9:98059400-98060000	Enhancers	Small Intestine	intestine
18	chr9:98059400-98060400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr9:98059400-98060400	Enhancers	NHEK	skin
20	chr9:98059400-98060800	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr9:98059400-98060800	Enhancers	Fetal Intestine Large	intestine
22	chr9:98059600-98060400	Enhancers	Fetal Intestine Small	intestine
23	chr9:98059600-98060600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr9:98059600-98063000	Weak transcription	Osteobl	bone
25	chr9:98059600-98067000	Weak transcription	GM12878-XiMat	blood
26	chr9:98059800-98063000	Weak transcription	NHLF	lung
27	chr9:98059800-98063200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr9:98059800-98064400	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr9:98059800-98068000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr9:98059800-98068600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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