Variant report

Variant	rs4647467
Chromosome Location	chr9:97962244-97962245
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97960729..97962513-chr9:97968919..97971853,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs4647347	1.00[AMR][1000 genomes]
rs4647353	1.00[AMR][1000 genomes]
rs4647375	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647402	1.00[ASW][hapmap]
rs4647456	1.00[ASW][hapmap];0.83[LWK][hapmap];0.87[AFR][1000 genomes]
rs4647503	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4647538	1.00[ASW][hapmap];1.00[AMR][1000 genomes]
rs4647542	1.00[AMR][1000 genomes]
rs57302938	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831656	chr9:97831551-97989980	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
2	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97952600-97963200	Weak transcription	Spleen	Spleen
2	chr9:97952600-97969400	Weak transcription	Fetal Intestine Small	intestine
3	chr9:97956000-97963600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr9:97958800-97968400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr9:97959000-97968400	Weak transcription	Fetal Intestine Large	intestine
6	chr9:97960000-97964800	Enhancers	Fetal Stomach	stomach
7	chr9:97960200-97966600	Weak transcription	Lung	lung
8	chr9:97960400-97967000	Weak transcription	Aorta	Aorta
9	chr9:97960600-97963200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr9:97960600-97963400	Weak transcription	Fetal Lung	lung
11	chr9:97960600-97964600	Weak transcription	Gastric	stomach
12	chr9:97960600-97969200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr9:97960800-97963800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr9:97961000-97963200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr9:97961000-97964800	Weak transcription	NHEK	skin
16	chr9:97961000-97965000	Weak transcription	NH-A	brain
17	chr9:97961000-97966600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr9:97961000-97966600	Weak transcription	HSMMtube	muscle
19	chr9:97961000-97968000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr9:97961000-97968000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr9:97961000-97968400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr9:97961200-97967800	Weak transcription	HSMM	muscle
23	chr9:97961800-97962600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr9:97961800-97962600	Enhancers	Stomach Smooth Muscle	stomach
25	chr9:97961800-97964600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr9:97962000-97962600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr9:97962000-97964400	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr9:97962000-97964400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr9:97962000-97980600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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