Variant report

Variant	rs4647551
Chromosome Location	chr9:97863630-97863631
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97767984..97771413-chr9:97863181..97865279,3	MCF-7	breast:
2	chr9:97863322..97865050-chr9:97889040..97891690,2	MCF-7	breast:
3	chr9:97677752..97679615-chr9:97863555..97866093,2	MCF-7	breast:
4	chr9:97836720..97838496-chr9:97862659..97865053,2	MCF-7	breast:
5	chr9:97765323..97769705-chr9:97862914..97866422,4	MCF-7	breast:
6	chr9:97400366..97403518-chr9:97862496..97865550,3	MCF-7	breast:
7	chr9:97683938..97686249-chr9:97862761..97864573,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000158169	Chromatin interaction
ENSG00000165140	Chromatin interaction
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs356660	1.00[LWK][hapmap];1.00[MKK][hapmap];0.83[YRI][hapmap]
rs356663	1.00[LWK][hapmap];1.00[MKK][hapmap];0.83[YRI][hapmap]
rs356671	1.00[LWK][hapmap];1.00[MKK][hapmap];0.83[YRI][hapmap]
rs356685	1.00[LWK][hapmap];1.00[MKK][hapmap];0.83[YRI][hapmap]
rs4647379	1.00[MKK][hapmap]
rs4647513	0.82[ASW][hapmap];1.00[MKK][hapmap];0.83[YRI][hapmap]
rs475413	1.00[MKK][hapmap]
rs7033294	0.83[YRI][hapmap];0.85[AFR][1000 genomes]
rs7049188	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
2	nsv1038106	chr9:97793038-97881416	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
3	nsv1038523	chr9:97797032-97923774	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
4	nsv540175	chr9:97797032-97923774	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
5	nsv831656	chr9:97831551-97989980	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4647551	MIR23B	cis	lymphoblastoid	seeQTL

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97813000-97873000	Weak transcription	K562	blood
2	chr9:97820600-97875000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr9:97838000-97871200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr9:97841200-97864400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:97844000-97898400	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr9:97846200-97880000	Weak transcription	Primary B cells from cord blood	blood
7	chr9:97847600-97878400	Weak transcription	Dnd41	blood
8	chr9:97849200-97863800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr9:97849800-97864600	Enhancers	Psoas Muscle	Psoas
10	chr9:97855000-97867800	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr9:97855200-97876800	Weak transcription	GM12878-XiMat	blood
12	chr9:97855400-97865400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr9:97855400-97884800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr9:97855600-97865400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr9:97855600-97876400	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr9:97855600-97878600	Weak transcription	Stomach Mucosa	stomach
17	chr9:97856200-97872600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr9:97856600-97865200	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr9:97857800-97869600	Weak transcription	HUVEC	blood vessel
20	chr9:97858000-97863800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr9:97858600-97867600	Genic enhancers	Fetal Muscle Leg	muscle
22	chr9:97858600-97877200	Strong transcription	Fetal Intestine Large	intestine
23	chr9:97858600-97878400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr9:97858800-97863800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr9:97858800-97870800	Genic enhancers	Fetal Muscle Trunk	muscle
26	chr9:97859000-97865400	Genic enhancers	Skeletal Muscle Male	skeletal muscle
27	chr9:97859200-97864200	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr9:97859600-97865400	Strong transcription	Duodenum Mucosa	Duodenum
29	chr9:97860000-97875600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr9:97860200-97867000	Enhancers	Fetal Heart	heart
31	chr9:97860400-97867800	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr9:97860400-97879000	Strong transcription	Liver	Liver
33	chr9:97860600-97864800	Strong transcription	Sigmoid Colon	Sigmoid Colon
34	chr9:97860600-97865000	Enhancers	Esophagus	oesophagus
35	chr9:97860600-97865400	Genic enhancers	Placenta	Placenta
36	chr9:97860600-97869000	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr9:97860600-97870200	Strong transcription	Thymus	Thymus
38	chr9:97861000-97865400	Strong transcription	Fetal Intestine Small	intestine
39	chr9:97861000-97865800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr9:97861000-97866200	Weak transcription	Primary B cells from peripheral blood	blood
41	chr9:97861000-97869000	Weak transcription	Fetal Thymus	thymus
42	chr9:97861200-97864200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr9:97861200-97865000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr9:97861200-97877200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr9:97861200-97889800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr9:97861600-97864000	Strong transcription	NHLF	lung
47	chr9:97861600-97864400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr9:97861600-97864400	Genic enhancers	Left Ventricle	heart
49	chr9:97861600-97866800	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr9:97861800-97864800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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