Variant report

Variant	rs7033294
Chromosome Location	chr9:97840093-97840094
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:97810039..97812419-chr9:97838552..97841239,2	MCF-7	breast:
2	chr9:97834530..97836565-chr9:97839818..97842096,2	MCF-7	breast:
3	chr9:97831645..97834250-chr9:97838730..97841950,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000148120	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs173339	0.89[YRI][hapmap]
rs242448	0.91[YRI][hapmap]
rs356660	1.00[YRI][hapmap]
rs356661	0.83[YRI][hapmap]
rs356663	1.00[YRI][hapmap]
rs356685	1.00[YRI][hapmap]
rs356686	0.91[YRI][hapmap]
rs4647513	1.00[YRI][hapmap]
rs4647551	0.83[YRI][hapmap];0.85[AFR][1000 genomes]
rs475413	0.83[YRI][hapmap]
rs7033307	0.80[YRI][hapmap]
rs7049188	0.90[YRI][hapmap];1.00[AFR][1000 genomes]
rs7866396	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933919	chr9:97619512-97919344	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	293 gene(s)	inside rSNPs	diseases
2	nsv1038106	chr9:97793038-97881416	Weak transcription Strong transcription Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
3	nsv1038523	chr9:97797032-97923774	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
4	nsv540175	chr9:97797032-97923774	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases
5	nsv831656	chr9:97831551-97989980	Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	274 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97813000-97873000	Weak transcription	K562	blood
2	chr9:97820000-97854200	Weak transcription	Fetal Brain Male	brain
3	chr9:97820400-97840800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr9:97820400-97843000	Weak transcription	Primary T cells from cord blood	blood
5	chr9:97820600-97875000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr9:97821400-97843200	Weak transcription	Fetal Brain Female	brain
7	chr9:97822800-97845400	Weak transcription	Primary B cells from cord blood	blood
8	chr9:97823600-97845000	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr9:97824800-97844600	Weak transcription	Fetal Thymus	thymus
10	chr9:97825200-97841000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:97825400-97854400	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr9:97825800-97843400	Weak transcription	Thymus	Thymus
13	chr9:97825800-97852600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr9:97826000-97842800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr9:97826200-97843200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr9:97826200-97847400	Weak transcription	HUVEC	blood vessel
17	chr9:97826400-97842800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr9:97826400-97844200	Weak transcription	GM12878-XiMat	blood
19	chr9:97827800-97841400	Genic enhancers	Liver	Liver
20	chr9:97830600-97843200	Weak transcription	Primary hematopoietic stem cells	blood
21	chr9:97830600-97844800	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr9:97830800-97840800	Strong transcription	NHEK	skin
23	chr9:97831200-97841200	Genic enhancers	Pancreas	Pancrea
24	chr9:97832200-97840800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr9:97832200-97841000	Enhancers	Fetal Heart	heart
26	chr9:97833200-97840600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr9:97835400-97845200	Weak transcription	HMEC	breast
28	chr9:97836200-97840200	Strong transcription	Hela-S3	cervix
29	chr9:97836200-97840800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr9:97836800-97844600	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr9:97837000-97840800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr9:97837000-97841400	Genic enhancers	Muscle Satellite Cultured Cells	--
33	chr9:97837000-97841400	Enhancers	Right Atrium	heart
34	chr9:97837400-97840400	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr9:97837400-97843000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr9:97837400-97843200	Enhancers	Brain Substantia Nigra	brain
37	chr9:97838000-97841600	Enhancers	Rectal Mucosa Donor 29	rectum
38	chr9:97838000-97842000	Enhancers	Stomach Mucosa	stomach
39	chr9:97838000-97842200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr9:97838000-97842400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
41	chr9:97838000-97871200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr9:97838200-97840400	Enhancers	Duodenum Mucosa	Duodenum
43	chr9:97838200-97843200	Enhancers	Brain Cingulate Gyrus	brain
44	chr9:97838400-97841800	Genic enhancers	Fetal Intestine Small	intestine
45	chr9:97838400-97842200	Enhancers	Duodenum Smooth Muscle	Duodenum
46	chr9:97838400-97842400	Enhancers	HUES6 Cell Line	embryonic stem cell
47	chr9:97838400-97842400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr9:97838400-97842400	Enhancers	Gastric	stomach
49	chr9:97838600-97842400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr9:97838600-97843200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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