Variant report

Variant	rs4647564
Chromosome Location	chr11:65102267-65102268
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:20)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:64862541..64864167-chr11:65101190..65102852,2	MCF-7	breast:
2	chr11:65029300..65032261-chr11:65099980..65102412,3	K562	blood:
3	chr11:65081631..65084592-chr11:65099872..65104597,5	K562	blood:
4	chr11:65098911..65102850-chr11:65147012..65151675,4	MCF-7	breast:
5	chr11:65100032..65102632-chr11:65307572..65309259,3	MCF-7	breast:
6	chr11:65101646..65104320-chr11:65195923..65197643,2	K562	blood:
7	chr11:65082224..65084911-chr11:65099875..65102878,3	K562	blood:
8	chr11:65099781..65103974-chr11:65120675..65126515,7	MCF-7	breast:
9	chr11:65101009..65102671-chr11:65109957..65112213,2	K562	blood:
10	chr11:65100243..65104610-chr11:65105410..65109851,8	K562	blood:
11	chr11:65100635..65103447-chr11:65112370..65113916,2	K562	blood:
12	chr11:65101528..65104353-chr11:65197990..65200376,2	K562	blood:
13	chr11:65099880..65103900-chr11:65265146..65267934,3	MCF-7	breast:
14	chr11:65099718..65102956-chr11:65121267..65125924,4	MCF-7	breast:
15	chr11:65100322..65103953-chr11:65104304..65109119,7	MCF-7	breast:
16	chr11:65102149..65103973-chr11:65118677..65120435,2	MCF-7	breast:
17	chr11:65081241..65085742-chr11:65099388..65103053,6	MCF-7	breast:
18	chr11:65077010..65079617-chr11:65101633..65103467,2	K562	blood:
19	chr11:65028467..65031251-chr11:65099786..65102995,3	MCF-7	breast:
20	chr11:65100087..65102594-chr11:65381500..65383141,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000133884	Chromatin interaction
ENSG00000173825	Chromatin interaction
ENSG00000149823	Chromatin interaction
ENSG00000162241	Chromatin interaction
ENSG00000168056	Chromatin interaction
ENSG00000149798	Chromatin interaction
ENSG00000173327	Chromatin interaction
ENSG00000270117	Chromatin interaction
ENSG00000014138	Chromatin interaction
ENSG00000251562	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2957274	1.00[MEX][hapmap]
rs4149835	1.00[MEX][hapmap]
rs4647578	1.00[MEX][hapmap]
rs647284	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv832190	chr11:64978144-65127613	Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	esv2422285	chr11:65013294-65254540	Genic enhancers Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	474 gene(s)	inside rSNPs	diseases
4	nsv897715	chr11:65083491-65427346	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	984 gene(s)	inside rSNPs	diseases
5	nsv897716	chr11:65083491-65481166	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	999 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65100800-65102400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr11:65100800-65102400	Active TSS	Fetal Intestine Small	intestine
3	chr11:65100800-65102600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:65100800-65102600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:65100800-65102600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:65100800-65102600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr11:65100800-65102600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr11:65100800-65102800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:65100800-65103000	Flanking Active TSS	Primary B cells from cord blood	blood
10	chr11:65101000-65102400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
11	chr11:65101000-65102400	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:65101000-65102400	Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr11:65101000-65102400	Active TSS	Fetal Kidney	kidney
14	chr11:65101000-65102400	Active TSS	Lung	lung
15	chr11:65101000-65102400	Active TSS	Psoas Muscle	Psoas
16	chr11:65101000-65102400	Active TSS	HepG2	liver
17	chr11:65101000-65102600	Active TSS	ES-I3 Cell Line	embryonic stem cell
18	chr11:65101000-65102600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr11:65101000-65102600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:65101000-65102600	Active TSS	iPS-15b Cell Line	embryonic stem cell
21	chr11:65101000-65102600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr11:65101000-65102600	Active TSS	Aorta	Aorta
23	chr11:65101000-65102600	Active TSS	Fetal Muscle Trunk	muscle
24	chr11:65101000-65102600	Active TSS	Sigmoid Colon	Sigmoid Colon
25	chr11:65101000-65102600	Active TSS	HSMMtube	muscle
26	chr11:65101000-65102600	Active TSS	NHDF-Ad	bronchial
27	chr11:65101000-65102800	Active TSS	H9 Cell Line	embryonic stem cell
28	chr11:65101000-65102800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr11:65101000-65102800	Active TSS	Ovary	ovary
30	chr11:65101000-65102800	Active TSS	A549	lung
31	chr11:65101000-65103000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr11:65101000-65103000	Active TSS	HUES48 Cell Line	embryonic stem cell
33	chr11:65101000-65103000	Active TSS	HUES6 Cell Line	embryonic stem cell
34	chr11:65101000-65103000	Active TSS	HSMM	muscle
35	chr11:65101000-65103000	Active TSS	NHLF	lung
36	chr11:65101000-65103200	Active TSS	Pancreatic Islets	Pancreatic Islet
37	chr11:65101400-65102400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
38	chr11:65101400-65102800	Active TSS	Right Atrium	heart
39	chr11:65101800-65102600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
40	chr11:65101800-65102600	Flanking Active TSS	Primary B cells from peripheral blood	blood
41	chr11:65101800-65102600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr11:65101800-65102600	Flanking Active TSS	Adipose Nuclei	Adipose
43	chr11:65101800-65102600	Flanking Active TSS	Liver	Liver
44	chr11:65101800-65102600	Flanking Active TSS	Colonic Mucosa	Colon
45	chr11:65101800-65102800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
46	chr11:65101800-65102800	Flanking Active TSS	Primary hematopoietic stem cells	blood
47	chr11:65101800-65103000	Flanking Active TSS	Primary T cells from cord blood	blood
48	chr11:65101800-65103000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
49	chr11:65101800-65103000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
50	chr11:65101800-65103000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood

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