Variant report

Variant	rs4149835
Chromosome Location	chr11:65088498-65088499
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:65085057..65089903-chr11:65095302..65099017,4	MCF-7	breast:
2	chr11:65044236..65045803-chr11:65087151..65090108,2	MCF-7	breast:
3	chr11:65088379..65090119-chr11:65098305..65101245,2	MCF-7	breast:
4	chr11:65087982..65090864-chr11:65100563..65103584,4	MCF-7	breast:
5	chr11:65088021..65090246-chr11:65101198..65103196,2	K562	blood:
6	chr11:65088058..65090877-chr11:65123140..65125273,2	K562	blood:

Variant related genes	Relation type
ENSG00000133884	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1152621	1.00[EUR][1000 genomes]
rs11823327	1.00[EUR][1000 genomes]
rs11826426	1.00[EUR][1000 genomes]
rs11826954	1.00[EUR][1000 genomes]
rs1194339	1.00[EUR][1000 genomes]
rs17146805	1.00[EUR][1000 genomes]
rs1784102	1.00[EUR][1000 genomes]
rs1784221	1.00[EUR][1000 genomes]
rs1939938	1.00[EUR][1000 genomes]
rs2307266	1.00[EUR][1000 genomes]
rs2957274	1.00[MEX][hapmap]
rs34286323	1.00[EUR][1000 genomes]
rs4149823	1.00[EUR][1000 genomes]
rs4149824	1.00[EUR][1000 genomes]
rs4149828	1.00[EUR][1000 genomes]
rs4149839	1.00[EUR][1000 genomes]
rs4647564	1.00[MEX][hapmap]
rs4647578	1.00[MEX][hapmap]
rs4647581	1.00[EUR][1000 genomes]
rs4647583	1.00[EUR][1000 genomes]
rs4647585	1.00[EUR][1000 genomes]
rs4647598	1.00[EUR][1000 genomes]
rs58771438	1.00[EUR][1000 genomes]
rs59598510	1.00[EUR][1000 genomes]
rs59646878	1.00[EUR][1000 genomes]
rs60174124	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60315122	1.00[EUR][1000 genomes]
rs61072220	1.00[EUR][1000 genomes]
rs61502141	1.00[EUR][1000 genomes]
rs647284	1.00[MEX][hapmap]
rs73482220	1.00[EUR][1000 genomes]
rs73482248	1.00[EUR][1000 genomes]
rs73482250	1.00[EUR][1000 genomes]
rs73482254	1.00[EUR][1000 genomes]
rs73482257	1.00[EUR][1000 genomes]
rs73482268	1.00[EUR][1000 genomes]
rs73482938	1.00[EUR][1000 genomes]
rs73482957	1.00[EUR][1000 genomes]
rs73482959	1.00[EUR][1000 genomes]
rs73482962	1.00[EUR][1000 genomes]
rs73482972	1.00[EUR][1000 genomes]
rs73482975	1.00[EUR][1000 genomes]
rs73484340	1.00[EUR][1000 genomes]
rs73484344	1.00[EUR][1000 genomes]
rs73484345	1.00[EUR][1000 genomes]
rs73484944	1.00[EUR][1000 genomes]
rs73484950	1.00[EUR][1000 genomes]
rs73484954	1.00[EUR][1000 genomes]
rs73484963	1.00[EUR][1000 genomes]
rs73484971	1.00[EUR][1000 genomes]
rs73484972	1.00[EUR][1000 genomes]
rs73484981	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv832190	chr11:64978144-65127613	Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	esv2422285	chr11:65013294-65254540	Genic enhancers Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	474 gene(s)	inside rSNPs	diseases
4	nsv897714	chr11:65076918-65091609	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv897715	chr11:65083491-65427346	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	984 gene(s)	inside rSNPs	diseases
6	nsv897716	chr11:65083491-65481166	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	999 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65083200-65093400	Weak transcription	Aorta	Aorta
2	chr11:65083600-65096600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr11:65083800-65096600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr11:65084400-65088600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr11:65085000-65090400	Genic enhancers	Fetal Muscle Leg	muscle
6	chr11:65085000-65100800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:65085200-65089400	Weak transcription	NH-A	brain
8	chr11:65085200-65089600	Weak transcription	Brain Anterior Caudate	brain
9	chr11:65085200-65089800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr11:65085200-65090000	Weak transcription	K562	blood
11	chr11:65085200-65091400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:65085200-65097200	Weak transcription	Stomach Mucosa	stomach
13	chr11:65085200-65101000	Weak transcription	Fetal Kidney	kidney
14	chr11:65085400-65097000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr11:65085800-65091800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr11:65085800-65101000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:65086200-65092200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr11:65086400-65090400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:65086400-65090400	Strong transcription	NHEK	skin
20	chr11:65086600-65090400	Genic enhancers	Fetal Muscle Trunk	muscle
21	chr11:65086800-65089600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:65086800-65090000	Genic enhancers	Spleen	Spleen
23	chr11:65086800-65090200	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr11:65086800-65090400	Genic enhancers	Fetal Stomach	stomach
25	chr11:65086800-65091000	Strong transcription	Osteobl	bone
26	chr11:65086800-65091600	Strong transcription	Fetal Intestine Small	intestine
27	chr11:65086800-65092000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr11:65087000-65088600	Strong transcription	NHDF-Ad	bronchial
29	chr11:65087000-65089800	Genic enhancers	Brain Inferior Temporal Lobe	brain
30	chr11:65087000-65089800	Genic enhancers	Lung	lung
31	chr11:65087000-65090200	Genic enhancers	Brain Hippocampus Middle	brain
32	chr11:65087000-65090200	Genic enhancers	NHLF	lung
33	chr11:65087000-65090400	Genic enhancers	Adipose Nuclei	Adipose
34	chr11:65087000-65090400	Strong transcription	Gastric	stomach
35	chr11:65087000-65090600	Strong transcription	HSMMtube	muscle
36	chr11:65087000-65091600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr11:65087200-65089600	Strong transcription	Colon Smooth Muscle	Colon
38	chr11:65087200-65090200	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr11:65087200-65090200	Bivalent Enhancer	Placenta	Placenta
40	chr11:65087200-65090400	Strong transcription	Fetal Intestine Large	intestine
41	chr11:65087200-65090400	Genic enhancers	Skeletal Muscle Male	skeletal muscle
42	chr11:65087400-65090400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr11:65087400-65090400	Strong transcription	Hela-S3	cervix
44	chr11:65087400-65090400	Strong transcription	HUVEC	blood vessel
45	chr11:65087400-65090600	Strong transcription	H9 Cell Line	embryonic stem cell
46	chr11:65087400-65091400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr11:65087600-65089600	Strong transcription	Duodenum Smooth Muscle	Duodenum
48	chr11:65087800-65090400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr11:65087800-65090400	Strong transcription	Sigmoid Colon	Sigmoid Colon
50	chr11:65087800-65090400	Strong transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links