Variant report

Variant	rs73482938
Chromosome Location	chr11:64992056-64992057
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:64989845..64992675-chr11:65080993..65083924,3	MCF-7	breast:
2	chr11:64977931..64980208-chr11:64990996..64992937,3	K562	blood:
3	chr11:64988866..64990383-chr11:64992045..64994203,2	K562	blood:
4	chr11:64991684..64993403-chr11:65306861..65309115,2	K562	blood:
5	chr11:64980421..64987264-chr11:64991140..64994999,6	K562	blood:
6	chr11:64980421..64983038-chr11:64992029..64994539,2	K562	blood:
7	chr11:64983043..64986391-chr11:64991756..64994999,4	K562	blood:
8	chr11:64957988..64959551-chr11:64991502..64993463,2	K562	blood:
9	chr11:64990436..64992901-chr11:65015967..65018929,2	MCF-7	breast:
10	chr11:64490664..64492722-chr11:64991494..64993936,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000197847	Chromatin interaction
ENSG00000168056	Chromatin interaction
ENSG00000149798	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11823327	1.00[EUR][1000 genomes]
rs11826426	1.00[EUR][1000 genomes]
rs11826954	1.00[EUR][1000 genomes]
rs17146805	1.00[EUR][1000 genomes]
rs1784102	1.00[EUR][1000 genomes]
rs1939938	1.00[EUR][1000 genomes]
rs2307266	1.00[EUR][1000 genomes]
rs34286323	1.00[EUR][1000 genomes]
rs4149823	1.00[EUR][1000 genomes]
rs4149824	1.00[EUR][1000 genomes]
rs4149828	1.00[EUR][1000 genomes]
rs4149835	1.00[EUR][1000 genomes]
rs4149839	1.00[EUR][1000 genomes]
rs4647581	1.00[EUR][1000 genomes]
rs4647583	1.00[EUR][1000 genomes]
rs4647585	1.00[EUR][1000 genomes]
rs4647598	1.00[EUR][1000 genomes]
rs58771438	1.00[EUR][1000 genomes]
rs59598510	1.00[EUR][1000 genomes]
rs59646878	1.00[EUR][1000 genomes]
rs60315122	1.00[EUR][1000 genomes]
rs61072220	1.00[EUR][1000 genomes]
rs61502141	1.00[EUR][1000 genomes]
rs73482220	1.00[EUR][1000 genomes]
rs73482248	1.00[EUR][1000 genomes]
rs73482250	1.00[EUR][1000 genomes]
rs73482254	1.00[EUR][1000 genomes]
rs73482257	1.00[EUR][1000 genomes]
rs73482268	1.00[EUR][1000 genomes]
rs73482957	1.00[EUR][1000 genomes]
rs73482959	1.00[EUR][1000 genomes]
rs73482962	1.00[EUR][1000 genomes]
rs73482972	1.00[EUR][1000 genomes]
rs73482975	1.00[EUR][1000 genomes]
rs73484340	1.00[EUR][1000 genomes]
rs73484344	1.00[EUR][1000 genomes]
rs73484345	1.00[EUR][1000 genomes]
rs73484944	1.00[EUR][1000 genomes]
rs73484950	1.00[EUR][1000 genomes]
rs73484954	1.00[EUR][1000 genomes]
rs73484963	1.00[EUR][1000 genomes]
rs73484971	1.00[EUR][1000 genomes]
rs73484972	1.00[EUR][1000 genomes]
rs73484981	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv897713	chr11:64915042-65000719	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	nsv832190	chr11:64978144-65127613	Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64950600-64992400	Weak transcription	Right Atrium	heart
2	chr11:64952400-64992800	Weak transcription	Fetal Heart	heart
3	chr11:64973800-64992600	Weak transcription	Fetal Kidney	kidney
4	chr11:64976600-64992600	Weak transcription	Psoas Muscle	Psoas
5	chr11:64977400-64998400	Weak transcription	Small Intestine	intestine
6	chr11:64977600-64993200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr11:64978400-64992200	Weak transcription	Stomach Mucosa	stomach
8	chr11:64978400-64992800	Weak transcription	HSMM	muscle
9	chr11:64978600-64992800	Weak transcription	HSMMtube	muscle
10	chr11:64979200-64992400	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr11:64979200-64993000	Weak transcription	Aorta	Aorta
12	chr11:64979400-64992400	Weak transcription	A549	lung
13	chr11:64979600-64992200	Weak transcription	NHEK	skin
14	chr11:64979800-64992400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr11:64979800-64993000	Weak transcription	Ovary	ovary
16	chr11:64980000-64992200	Weak transcription	HMEC	breast
17	chr11:64980200-64992200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr11:64980200-64992600	Weak transcription	Colonic Mucosa	Colon
19	chr11:64980200-64993000	Weak transcription	Gastric	stomach
20	chr11:64980400-64992600	Weak transcription	Esophagus	oesophagus
21	chr11:64980400-64992600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr11:64980400-64993000	Weak transcription	Pancreas	Pancrea
23	chr11:64981000-64992600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr11:64981200-64992200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr11:64981600-64992200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr11:64981800-64993400	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr11:64982000-64992200	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr11:64982200-64992400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr11:64983200-64992200	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr11:64983600-64993000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr11:64985200-64992600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr11:64986800-64992400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr11:64987200-64992400	Weak transcription	Stomach Smooth Muscle	stomach
34	chr11:64987400-64992200	Weak transcription	NHDF-Ad	bronchial
35	chr11:64987600-64992200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr11:64987600-64992400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr11:64987600-64992400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr11:64987600-64992400	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr11:64987600-64992400	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr11:64987600-64992800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr11:64987600-64992800	Weak transcription	NHLF	lung
42	chr11:64987600-64993000	Weak transcription	Thymus	Thymus
43	chr11:64987800-64992200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr11:64987800-64992200	Weak transcription	Placenta	Placenta
45	chr11:64987800-64992200	Weak transcription	K562	blood
46	chr11:64987800-64992400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr11:64988000-64992200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr11:64988000-64992600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr11:64990200-64992200	Weak transcription	HUVEC	blood vessel
50	chr11:64990200-64992400	Weak transcription	Adipose Nuclei	Adipose

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