Variant report

Variant	rs11826954
Chromosome Location	chr11:65065518-65065519
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:65063934..65065977-chr11:65080966..65082674,3	K562	blood:
2	chr11:65060667..65062839-chr11:65063520..65067022,4	K562	blood:
3	chr11:65064621..65066242-chr11:65072875..65075856,2	MCF-7	breast:
4	chr11:65062994..65065598-chr11:65067029..65069145,2	MCF-7	breast:
5	chr11:65051019..65054457-chr11:65064640..65066538,3	K562	blood:
6	chr11:65051677..65054457-chr11:65064931..65067121,3	K562	blood:
7	chr11:65060584..65062839-chr11:65064717..65066398,2	K562	blood:

Variant related genes	Relation type
ENSG00000014138	Chromatin interaction
ENSG00000149798	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1152621	1.00[EUR][1000 genomes]
rs11819804	1.00[AMR][1000 genomes]
rs11821423	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11821851	1.00[AMR][1000 genomes]
rs11823327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11824738	1.00[AMR][1000 genomes]
rs11824827	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11826426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1194339	1.00[EUR][1000 genomes]
rs17146805	1.00[EUR][1000 genomes]
rs1784102	1.00[EUR][1000 genomes]
rs1784221	1.00[EUR][1000 genomes]
rs1939938	1.00[EUR][1000 genomes]
rs2307266	1.00[EUR][1000 genomes]
rs34286323	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35225270	1.00[AMR][1000 genomes]
rs4149823	1.00[EUR][1000 genomes]
rs4149824	1.00[EUR][1000 genomes]
rs4149828	1.00[EUR][1000 genomes]
rs4149835	1.00[EUR][1000 genomes]
rs4149839	1.00[EUR][1000 genomes]
rs41556122	1.00[AMR][1000 genomes]
rs4647581	1.00[EUR][1000 genomes]
rs4647583	1.00[EUR][1000 genomes]
rs4647585	1.00[EUR][1000 genomes]
rs4647598	1.00[EUR][1000 genomes]
rs58771438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59598510	1.00[EUR][1000 genomes]
rs59646878	1.00[EUR][1000 genomes]
rs60315122	1.00[EUR][1000 genomes]
rs61072220	1.00[EUR][1000 genomes]
rs61502141	1.00[EUR][1000 genomes]
rs7107815	1.00[AMR][1000 genomes]
rs7108941	1.00[AMR][1000 genomes]
rs7114046	1.00[AMR][1000 genomes]
rs7121464	1.00[AMR][1000 genomes]
rs7123885	1.00[AMR][1000 genomes]
rs73482220	1.00[EUR][1000 genomes]
rs73482248	1.00[EUR][1000 genomes]
rs73482250	1.00[EUR][1000 genomes]
rs73482254	1.00[EUR][1000 genomes]
rs73482257	1.00[EUR][1000 genomes]
rs73482268	1.00[EUR][1000 genomes]
rs73482938	1.00[EUR][1000 genomes]
rs73482957	1.00[EUR][1000 genomes]
rs73482959	1.00[EUR][1000 genomes]
rs73482962	1.00[EUR][1000 genomes]
rs73482972	1.00[EUR][1000 genomes]
rs73482975	1.00[EUR][1000 genomes]
rs73484340	1.00[EUR][1000 genomes]
rs73484344	1.00[EUR][1000 genomes]
rs73484345	1.00[EUR][1000 genomes]
rs73484944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73484950	1.00[EUR][1000 genomes]
rs73484954	1.00[EUR][1000 genomes]
rs73484963	1.00[EUR][1000 genomes]
rs73484971	1.00[EUR][1000 genomes]
rs73484972	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73484981	1.00[EUR][1000 genomes]
rs7926687	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv832190	chr11:64978144-65127613	Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	esv2422285	chr11:65013294-65254540	Genic enhancers Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	474 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65042400-65068800	Strong transcription	Fetal Thymus	thymus
2	chr11:65042800-65072800	Strong transcription	Dnd41	blood
3	chr11:65043000-65066200	Strong transcription	H9 Cell Line	embryonic stem cell
4	chr11:65043000-65067600	Strong transcription	HUES6 Cell Line	embryonic stem cell
5	chr11:65043200-65066400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
6	chr11:65043200-65066600	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr11:65043400-65067200	Strong transcription	H1 Cell Line	embryonic stem cell
8	chr11:65043400-65067200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:65044000-65065600	Strong transcription	Thymus	Thymus
10	chr11:65044400-65066200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:65045000-65066600	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr11:65045800-65067200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
13	chr11:65046000-65067000	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr11:65047800-65075800	Weak transcription	Small Intestine	intestine
15	chr11:65048400-65069000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr11:65052400-65066600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr11:65053200-65066200	Strong transcription	HMEC	breast
18	chr11:65053200-65067000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr11:65053600-65066400	Strong transcription	NHEK	skin
20	chr11:65054600-65066000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr11:65056000-65068800	Genic enhancers	Fetal Stomach	stomach
22	chr11:65057200-65065600	Weak transcription	Aorta	Aorta
23	chr11:65058600-65067200	Genic enhancers	Fetal Intestine Small	intestine
24	chr11:65059000-65067200	Strong transcription	Fetal Brain Female	brain
25	chr11:65059200-65067000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr11:65059200-65067200	Strong transcription	Primary B cells from peripheral blood	blood
27	chr11:65059600-65066400	Strong transcription	Brain Germinal Matrix	brain
28	chr11:65060000-65065600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:65060000-65068600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:65060000-65069600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr11:65060200-65065600	Enhancers	Colon Smooth Muscle	Colon
32	chr11:65060200-65065800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr11:65060200-65066000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr11:65060200-65067600	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr11:65060400-65068400	Strong transcription	iPS-15b Cell Line	embryonic stem cell
36	chr11:65060600-65066000	Strong transcription	Gastric	stomach
37	chr11:65060600-65069000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr11:65060800-65065800	Strong transcription	Duodenum Mucosa	Duodenum
39	chr11:65060800-65067200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr11:65060800-65067400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr11:65061000-65065600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr11:65061200-65067200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr11:65061400-65066200	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr11:65061400-65066600	Strong transcription	Hela-S3	cervix
45	chr11:65061400-65067000	Strong transcription	Primary neutrophils fromperipheralblood	blood
46	chr11:65061600-65066600	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr11:65062000-65065800	Enhancers	Fetal Lung	lung
48	chr11:65062000-65066200	Genic enhancers	Placenta	Placenta
49	chr11:65062000-65067000	Strong transcription	Primary monocytes fromperipheralblood	blood
50	chr11:65062600-65066000	Genic enhancers	Right Ventricle	heart

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