Variant report

Variant	rs11823327
Chromosome Location	chr11:65068878-65068879
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:65062994..65065598-chr11:65067029..65069145,2	MCF-7	breast:
2	chr11:65066474..65068959-chr11:65073431..65075830,2	MCF-7	breast:
3	chr11:65067238..65069227-chr11:65082339..65083846,2	MCF-7	breast:
4	chr11:65066072..65068359-chr11:65068503..65070591,2	MCF-7	breast:
5	chr11:65067128..65069997-chr11:65080803..65083874,3	K562	blood:
6	chr11:65047637..65049685-chr11:65066933..65069852,2	MCF-7	breast:
7	chr11:65068343..65070835-chr11:65079174..65082064,2	MCF-7	breast:
8	chr11:65053971..65055888-chr11:65068050..65070262,2	MCF-7	breast:
9	chr11:65067115..65069965-chr11:65073669..65075619,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC25A45-2	chr11:65068614-65068920	NONHSAT022099

No data

Variant related genes	Relation type
ENSG00000014138	Chromatin interaction
ENSG00000149798	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1152621	1.00[EUR][1000 genomes]
rs11819804	1.00[AMR][1000 genomes]
rs11821423	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11821851	1.00[AMR][1000 genomes]
rs11824738	1.00[AMR][1000 genomes]
rs11824827	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11826426	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11826954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1194339	1.00[EUR][1000 genomes]
rs17146805	1.00[EUR][1000 genomes]
rs1784102	1.00[EUR][1000 genomes]
rs1784221	1.00[EUR][1000 genomes]
rs1939938	1.00[EUR][1000 genomes]
rs2307266	1.00[EUR][1000 genomes]
rs34286323	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35225270	1.00[AMR][1000 genomes]
rs4149823	1.00[EUR][1000 genomes]
rs4149824	1.00[EUR][1000 genomes]
rs4149828	1.00[EUR][1000 genomes]
rs4149835	1.00[EUR][1000 genomes]
rs4149839	1.00[EUR][1000 genomes]
rs41556122	1.00[AMR][1000 genomes]
rs4647581	1.00[EUR][1000 genomes]
rs4647583	1.00[EUR][1000 genomes]
rs4647585	1.00[EUR][1000 genomes]
rs4647598	1.00[EUR][1000 genomes]
rs58771438	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59598510	1.00[EUR][1000 genomes]
rs59646878	1.00[EUR][1000 genomes]
rs60315122	1.00[EUR][1000 genomes]
rs61072220	1.00[EUR][1000 genomes]
rs61502141	1.00[EUR][1000 genomes]
rs7107815	1.00[AMR][1000 genomes]
rs7108941	1.00[AMR][1000 genomes]
rs7114046	1.00[AMR][1000 genomes]
rs7121464	1.00[AMR][1000 genomes]
rs7123885	1.00[AMR][1000 genomes]
rs73482220	1.00[EUR][1000 genomes]
rs73482248	1.00[EUR][1000 genomes]
rs73482250	1.00[EUR][1000 genomes]
rs73482254	1.00[EUR][1000 genomes]
rs73482257	1.00[EUR][1000 genomes]
rs73482268	1.00[EUR][1000 genomes]
rs73482938	1.00[EUR][1000 genomes]
rs73482957	1.00[EUR][1000 genomes]
rs73482959	1.00[EUR][1000 genomes]
rs73482962	1.00[EUR][1000 genomes]
rs73482972	1.00[EUR][1000 genomes]
rs73482975	1.00[EUR][1000 genomes]
rs73484340	1.00[EUR][1000 genomes]
rs73484344	1.00[EUR][1000 genomes]
rs73484345	1.00[EUR][1000 genomes]
rs73484944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73484950	1.00[EUR][1000 genomes]
rs73484954	1.00[EUR][1000 genomes]
rs73484963	1.00[EUR][1000 genomes]
rs73484971	1.00[EUR][1000 genomes]
rs73484972	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73484981	1.00[EUR][1000 genomes]
rs7926687	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv832190	chr11:64978144-65127613	Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	esv2422285	chr11:65013294-65254540	Genic enhancers Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	474 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65042800-65072800	Strong transcription	Dnd41	blood
2	chr11:65047800-65075800	Weak transcription	Small Intestine	intestine
3	chr11:65048400-65069000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:65060000-65069600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:65060600-65069000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr11:65062800-65069600	Weak transcription	Stomach Mucosa	stomach
7	chr11:65062800-65077200	Weak transcription	Fetal Brain Male	brain
8	chr11:65063800-65069000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:65063800-65081200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr11:65064000-65069200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr11:65064000-65069400	Weak transcription	HUVEC	blood vessel
12	chr11:65064000-65070000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr11:65064000-65071200	Weak transcription	GM12878-XiMat	blood
14	chr11:65064600-65069000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr11:65065000-65069000	Weak transcription	K562	blood
16	chr11:65065000-65081800	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr11:65065000-65081800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr11:65066000-65069000	Weak transcription	Esophagus	oesophagus
19	chr11:65066000-65069000	Weak transcription	Gastric	stomach
20	chr11:65066000-65069000	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr11:65066000-65069200	Weak transcription	Fetal Kidney	kidney
22	chr11:65066000-65073400	Strong transcription	Thymus	Thymus
23	chr11:65066000-65081800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr11:65066200-65071000	Enhancers	Placenta	Placenta
25	chr11:65066200-65071200	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr11:65066200-65076200	Weak transcription	Primary T cells from cord blood	blood
27	chr11:65066200-65078000	Weak transcription	HMEC	breast
28	chr11:65066400-65069200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr11:65066400-65069200	Weak transcription	A549	lung
30	chr11:65066400-65071200	Weak transcription	NHEK	skin
31	chr11:65066400-65080800	Weak transcription	Brain Germinal Matrix	brain
32	chr11:65066600-65069000	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr11:65066600-65071600	Weak transcription	Pancreas	Pancrea
34	chr11:65066600-65072800	Weak transcription	Duodenum Mucosa	Duodenum
35	chr11:65066600-65076000	Weak transcription	Osteobl	bone
36	chr11:65066600-65081600	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr11:65066600-65081800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr11:65066800-65069200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr11:65066800-65069200	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr11:65066800-65069400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr11:65066800-65071200	Weak transcription	Psoas Muscle	Psoas
42	chr11:65066800-65073000	Weak transcription	NH-A	brain
43	chr11:65067000-65069000	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr11:65067000-65069000	Weak transcription	Brain Anterior Caudate	brain
45	chr11:65067000-65069000	Weak transcription	Colonic Mucosa	Colon
46	chr11:65067000-65069200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr11:65067000-65069200	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr11:65067000-65069200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr11:65067000-65069200	Enhancers	Stomach Smooth Muscle	stomach
50	chr11:65067000-65069600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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