Variant report

Variant	rs11824738
Chromosome Location	chr11:65074475-65074476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:65074254..65077175-chr11:65081347..65083699,4	MCF-7	breast:
2	chr11:65064621..65066242-chr11:65072875..65075856,2	MCF-7	breast:
3	chr11:65073855..65075835-chr11:65076767..65078469,2	MCF-7	breast:
4	chr11:65072805..65075705-chr11:65077209..65079832,4	K562	blood:
5	chr11:65067115..65069965-chr11:65073669..65075619,2	MCF-7	breast:
6	chr11:65066474..65068959-chr11:65073431..65075830,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000149798	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11819804	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11821423	1.00[AMR][1000 genomes]
rs11821851	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11823327	1.00[AMR][1000 genomes]
rs11824827	1.00[AMR][1000 genomes]
rs11826426	1.00[AMR][1000 genomes]
rs11826954	1.00[AMR][1000 genomes]
rs34286323	1.00[AMR][1000 genomes]
rs35225270	1.00[AMR][1000 genomes]
rs41544519	0.83[AFR][1000 genomes]
rs41556122	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58771438	1.00[AMR][1000 genomes]
rs7107815	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7108941	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7114046	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7121464	1.00[AMR][1000 genomes]
rs7123885	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73484944	1.00[AMR][1000 genomes]
rs73484972	1.00[AMR][1000 genomes]
rs7926687	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv832190	chr11:64978144-65127613	Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	esv2422285	chr11:65013294-65254540	Genic enhancers Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	474 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65047800-65075800	Weak transcription	Small Intestine	intestine
2	chr11:65062800-65077200	Weak transcription	Fetal Brain Male	brain
3	chr11:65063800-65081200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr11:65065000-65081800	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr11:65065000-65081800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr11:65066000-65081800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr11:65066200-65076200	Weak transcription	Primary T cells from cord blood	blood
8	chr11:65066200-65078000	Weak transcription	HMEC	breast
9	chr11:65066400-65080800	Weak transcription	Brain Germinal Matrix	brain
10	chr11:65066600-65076000	Weak transcription	Osteobl	bone
11	chr11:65066600-65081600	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr11:65066600-65081800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr11:65067000-65075800	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr11:65067000-65076400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr11:65067000-65081800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr11:65067200-65076000	Weak transcription	Fetal Brain Female	brain
17	chr11:65067400-65075200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr11:65068200-65079200	Genic enhancers	Fetal Intestine Small	intestine
19	chr11:65068600-65079800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:65069400-65077600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:65069600-65075800	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr11:65069800-65075200	Weak transcription	HUVEC	blood vessel
23	chr11:65069800-65076000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr11:65070000-65074800	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr11:65070000-65075200	Weak transcription	Right Atrium	heart
26	chr11:65070000-65075200	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr11:65070000-65075400	Weak transcription	Brain Anterior Caudate	brain
28	chr11:65070000-65075400	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr11:65070000-65075600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr11:65070000-65076000	Weak transcription	Esophagus	oesophagus
31	chr11:65070000-65077800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr11:65070000-65078200	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr11:65070200-65074800	Weak transcription	NHDF-Ad	bronchial
34	chr11:65070200-65075000	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr11:65070200-65075000	Weak transcription	Left Ventricle	heart
36	chr11:65070200-65075000	Weak transcription	Right Ventricle	heart
37	chr11:65070200-65075200	Weak transcription	Lung	lung
38	chr11:65070200-65075200	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr11:65070200-65075600	Weak transcription	Fetal Heart	heart
40	chr11:65070200-65075600	Weak transcription	Fetal Kidney	kidney
41	chr11:65070200-65076000	Weak transcription	Primary hematopoietic stem cells	blood
42	chr11:65070200-65077600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr11:65070200-65077600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr11:65070400-65076000	Weak transcription	HSMMtube	muscle
45	chr11:65070600-65075400	Weak transcription	HSMM	muscle
46	chr11:65071200-65076800	Genic enhancers	Fetal Muscle Leg	muscle
47	chr11:65071600-65074600	Enhancers	Liver	Liver
48	chr11:65071600-65075200	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr11:65071600-65075800	Weak transcription	NHEK	skin
50	chr11:65071800-65075200	Enhancers	Fetal Intestine Large	intestine

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