Variant report

Variant	rs7121464
Chromosome Location	chr11:65022046-65022047
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:65017523..65022048-chr11:65027523..65031250,6	K562	blood:
2	chr11:64877484..64878344-chr11:65021171..65022109,2	K562	blood:
3	chr11:65019811..65024009-chr11:65028020..65030631,3	MCF-7	breast:
4	chr11:64977079..64978948-chr11:65020056..65023023,2	MCF-7	breast:
5	chr11:64971954..64972873-chr11:65021112..65022146,4	MCF-7	breast:
6	chr11:64981438..64983077-chr11:65020117..65022507,2	MCF-7	breast:
7	chr11:64971923..64972917-chr11:65021064..65022079,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000149823	Chromatin interaction
ENSG00000014138	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11819804	1.00[AMR][1000 genomes]
rs11821423	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11821851	1.00[AMR][1000 genomes]
rs11823327	1.00[AMR][1000 genomes]
rs11824738	1.00[AMR][1000 genomes]
rs11824827	1.00[AMR][1000 genomes]
rs11826426	1.00[AMR][1000 genomes]
rs11826954	1.00[AMR][1000 genomes]
rs34286323	1.00[AMR][1000 genomes]
rs35225270	1.00[AMR][1000 genomes]
rs41556122	1.00[AMR][1000 genomes]
rs58771438	1.00[AMR][1000 genomes]
rs7107815	1.00[AMR][1000 genomes]
rs7108941	1.00[AMR][1000 genomes]
rs7113238	0.96[AFR][1000 genomes]
rs7114046	1.00[AMR][1000 genomes]
rs7123885	1.00[AMR][1000 genomes]
rs73484944	1.00[AMR][1000 genomes]
rs73484972	1.00[AMR][1000 genomes]
rs7926687	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv832190	chr11:64978144-65127613	Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv976461	chr11:65000821-65054446	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
4	esv2422285	chr11:65013294-65254540	Genic enhancers Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	474 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65015200-65028600	Weak transcription	Fetal Intestine Small	intestine
2	chr11:65016400-65028600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:65018400-65028600	Weak transcription	Liver	Liver
4	chr11:65019600-65028400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:65021800-65022800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:65021800-65023000	Enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links