Variant report

Variant	rs73482959
Chromosome Location	chr11:65011498-65011499
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:65009207..65012069-chr11:65028349..65030428,2	K562	blood:
2	chr11:65011226..65014222-chr11:65014565..65017587,4	K562	blood:
3	chr11:64976044..64978600-chr11:65010994..65013774,2	MCF-7	breast:
4	chr11:65009967..65012363-chr11:65012560..65014972,3	K562	blood:
5	chr11:65010575..65012726-chr11:65016073..65017587,2	K562	blood:

Variant related genes	Relation type
ENSG00000014138	Chromatin interaction
ENSG00000014216	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11823327	1.00[EUR][1000 genomes]
rs11826426	1.00[EUR][1000 genomes]
rs11826954	1.00[EUR][1000 genomes]
rs17146805	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1784102	1.00[EUR][1000 genomes]
rs1939938	1.00[EUR][1000 genomes]
rs2307266	1.00[EUR][1000 genomes]
rs34286323	1.00[EUR][1000 genomes]
rs4149823	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4149824	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4149828	1.00[EUR][1000 genomes]
rs4149835	1.00[EUR][1000 genomes]
rs4149839	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4647581	1.00[EUR][1000 genomes]
rs4647583	1.00[EUR][1000 genomes]
rs4647585	1.00[EUR][1000 genomes]
rs4647598	1.00[EUR][1000 genomes]
rs57267799	0.91[AFR][1000 genomes]
rs58771438	1.00[EUR][1000 genomes]
rs59598510	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59646878	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60315122	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61072220	1.00[EUR][1000 genomes]
rs61502141	1.00[EUR][1000 genomes]
rs73482220	1.00[EUR][1000 genomes]
rs73482248	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73482250	1.00[EUR][1000 genomes]
rs73482254	1.00[EUR][1000 genomes]
rs73482257	1.00[EUR][1000 genomes]
rs73482268	1.00[EUR][1000 genomes]
rs73482938	1.00[EUR][1000 genomes]
rs73482957	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73482962	1.00[EUR][1000 genomes]
rs73482972	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73482975	1.00[EUR][1000 genomes]
rs73484340	1.00[EUR][1000 genomes]
rs73484344	1.00[EUR][1000 genomes]
rs73484345	1.00[EUR][1000 genomes]
rs73484944	1.00[EUR][1000 genomes]
rs73484950	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73484954	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73484963	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73484966	0.91[AFR][1000 genomes]
rs73484971	1.00[EUR][1000 genomes]
rs73484972	1.00[EUR][1000 genomes]
rs73484981	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73484989	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv832190	chr11:64978144-65127613	Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv976461	chr11:65000821-65054446	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65009800-65016000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:65010600-65011800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr11:65010800-65011800	Enhancers	H1 Cell Line	embryonic stem cell
4	chr11:65010800-65011800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr11:65010800-65012000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr11:65011000-65011800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:65011200-65011600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:65011200-65014600	Enhancers	Fetal Intestine Small	intestine
9	chr11:65011400-65011600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr11:65011400-65012200	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr11:65011400-65014000	Weak transcription	Fetal Kidney	kidney

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