Variant report

Variant	rs73482254
Chromosome Location	chr11:65101602-65101603
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:17)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:17 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:64862541..64864167-chr11:65101190..65102852,2	MCF-7	breast:
2	chr11:65029300..65032261-chr11:65099980..65102412,3	K562	blood:
3	chr11:65081631..65084592-chr11:65099872..65104597,5	K562	blood:
4	chr11:65098911..65102850-chr11:65147012..65151675,4	MCF-7	breast:
5	chr11:65100032..65102632-chr11:65307572..65309259,3	MCF-7	breast:
6	chr11:65082224..65084911-chr11:65099875..65102878,3	K562	blood:
7	chr11:65099781..65103974-chr11:65120675..65126515,7	MCF-7	breast:
8	chr11:65101009..65102671-chr11:65109957..65112213,2	K562	blood:
9	chr11:65100243..65104610-chr11:65105410..65109851,8	K562	blood:
10	chr11:65100635..65103447-chr11:65112370..65113916,2	K562	blood:
11	chr11:65101528..65104353-chr11:65197990..65200376,2	K562	blood:
12	chr11:65099880..65103900-chr11:65265146..65267934,3	MCF-7	breast:
13	chr11:65099718..65102956-chr11:65121267..65125924,4	MCF-7	breast:
14	chr11:65100322..65103953-chr11:65104304..65109119,7	MCF-7	breast:
15	chr11:65081241..65085742-chr11:65099388..65103053,6	MCF-7	breast:
16	chr11:65028467..65031251-chr11:65099786..65102995,3	MCF-7	breast:
17	chr11:65100087..65102594-chr11:65381500..65383141,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000270117	Chromatin interaction
ENSG00000162241	Chromatin interaction
ENSG00000251562	Chromatin interaction
ENSG00000149823	Chromatin interaction
ENSG00000133884	Chromatin interaction
ENSG00000173327	Chromatin interaction
ENSG00000014138	Chromatin interaction
ENSG00000173825	Chromatin interaction
ENSG00000168056	Chromatin interaction
ENSG00000149798	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1152621	1.00[EUR][1000 genomes]
rs11823327	1.00[EUR][1000 genomes]
rs11826426	1.00[EUR][1000 genomes]
rs11826954	1.00[EUR][1000 genomes]
rs1194339	1.00[EUR][1000 genomes]
rs17146805	1.00[EUR][1000 genomes]
rs1784102	1.00[EUR][1000 genomes]
rs1784221	1.00[EUR][1000 genomes]
rs1939938	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2307266	1.00[EUR][1000 genomes]
rs34286323	1.00[EUR][1000 genomes]
rs4149823	1.00[EUR][1000 genomes]
rs4149824	1.00[EUR][1000 genomes]
rs4149828	1.00[EUR][1000 genomes]
rs4149835	1.00[EUR][1000 genomes]
rs4149839	1.00[EUR][1000 genomes]
rs4647581	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4647583	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4647585	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4647598	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58771438	1.00[EUR][1000 genomes]
rs59598510	1.00[EUR][1000 genomes]
rs59646878	1.00[EUR][1000 genomes]
rs60315122	1.00[EUR][1000 genomes]
rs61072220	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61502141	1.00[EUR][1000 genomes]
rs73482220	1.00[EUR][1000 genomes]
rs73482248	1.00[EUR][1000 genomes]
rs73482250	1.00[EUR][1000 genomes]
rs73482257	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73482268	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73482938	1.00[EUR][1000 genomes]
rs73482957	1.00[EUR][1000 genomes]
rs73482959	1.00[EUR][1000 genomes]
rs73482962	1.00[EUR][1000 genomes]
rs73482972	1.00[EUR][1000 genomes]
rs73482975	1.00[EUR][1000 genomes]
rs73484340	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73484344	1.00[EUR][1000 genomes]
rs73484345	1.00[EUR][1000 genomes]
rs73484944	1.00[EUR][1000 genomes]
rs73484950	1.00[EUR][1000 genomes]
rs73484954	1.00[EUR][1000 genomes]
rs73484963	1.00[EUR][1000 genomes]
rs73484971	1.00[EUR][1000 genomes]
rs73484972	1.00[EUR][1000 genomes]
rs73484981	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526181	chr11:64638041-65257329	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1539 gene(s)	inside rSNPs	diseases
2	nsv832190	chr11:64978144-65127613	Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	esv2422285	chr11:65013294-65254540	Genic enhancers Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	474 gene(s)	inside rSNPs	diseases
4	nsv897715	chr11:65083491-65427346	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	984 gene(s)	inside rSNPs	diseases
5	nsv897716	chr11:65083491-65481166	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	999 gene(s)	inside rSNPs	diseases
6	esv3448805	chr11:65099726-65102224	Flanking Active TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:65100800-65101800	Active TSS	Primary monocytes fromperipheralblood	blood
2	chr11:65100800-65101800	Active TSS	Primary neutrophils fromperipheralblood	blood
3	chr11:65100800-65101800	Active TSS	Primary B cells from peripheral blood	blood
4	chr11:65100800-65101800	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
5	chr11:65100800-65101800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr11:65100800-65101800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr11:65100800-65101800	Active TSS	Colonic Mucosa	Colon
8	chr11:65100800-65101800	Active TSS	Fetal Thymus	thymus
9	chr11:65100800-65101800	Active TSS	Monocytes-CD14+_RO01746	blood
10	chr11:65100800-65102000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:65100800-65102000	Active TSS	Breast Myoepithelial Primary Cells	Breast
12	chr11:65100800-65102000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:65100800-65102000	Active TSS	Cortex derived primary cultured neurospheres	brain
14	chr11:65100800-65102000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr11:65100800-65102000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr11:65100800-65102000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
17	chr11:65100800-65102000	Active TSS	Fetal Brain Female	brain
18	chr11:65100800-65102000	Active TSS	Fetal Intestine Large	intestine
19	chr11:65100800-65102000	Active TSS	Fetal Muscle Leg	muscle
20	chr11:65100800-65102000	Active TSS	Placenta	Placenta
21	chr11:65100800-65102000	Active TSS	Skeletal Muscle Female	skeletal muscle
22	chr11:65100800-65102000	Active TSS	Hela-S3	cervix
23	chr11:65100800-65102000	Active TSS	HMEC	breast
24	chr11:65100800-65102000	Active TSS	HUVEC	blood vessel
25	chr11:65100800-65102000	Active TSS	Osteobl	bone
26	chr11:65100800-65102200	Active TSS	HUES64 Cell Line	embryonic stem cell
27	chr11:65100800-65102200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr11:65100800-65102200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:65100800-65102200	Active TSS	Fetal Stomach	stomach
30	chr11:65100800-65102200	Active TSS	Stomach Smooth Muscle	stomach
31	chr11:65100800-65102200	Active TSS	Thymus	Thymus
32	chr11:65100800-65102400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr11:65100800-65102400	Active TSS	Fetal Intestine Small	intestine
34	chr11:65100800-65102600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:65100800-65102600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr11:65100800-65102600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr11:65100800-65102600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr11:65100800-65102600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr11:65100800-65102800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr11:65100800-65103000	Flanking Active TSS	Primary B cells from cord blood	blood
41	chr11:65101000-65101800	Active TSS	Primary T cells from cord blood	blood
42	chr11:65101000-65101800	Active TSS	Primary T cells fromperipheralblood	blood
43	chr11:65101000-65101800	Active TSS	Primary hematopoietic stem cells	blood
44	chr11:65101000-65101800	Active TSS	Primary hematopoietic stem cells short term culture	blood
45	chr11:65101000-65101800	Active TSS	Adipose Nuclei	Adipose
46	chr11:65101000-65101800	Active TSS	Liver	Liver
47	chr11:65101000-65101800	Active TSS	Fetal Heart	heart
48	chr11:65101000-65101800	Active TSS	Skeletal Muscle Male	skeletal muscle
49	chr11:65101000-65102000	Active TSS	H1 Cell Line	embryonic stem cell
50	chr11:65101000-65102000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood

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