The 2.0 version of rSNPBase

Variant report

Variant rs464975
Chromosome Location chr5:9523772-9523773
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:9499200-9528600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
2 chr5:9513000-9532800 Weak transcription Fetal Stomach stomach
3 chr5:9513000-9535200 Weak transcription Aorta Aorta
4 chr5:9517400-9523800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
5 chr5:9518600-9524400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
6 chr5:9518800-9525200 Weak transcription Small Intestine intestine
7 chr5:9520400-9532800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
8 chr5:9520600-9526800 Weak transcription Left Ventricle heart
9 chr5:9520800-9523800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
10 chr5:9520800-9524400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
11 chr5:9521200-9527000 Weak transcription Placenta Amnion Placenta Amnion
12 chr5:9521200-9544400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr5:9522200-9524200 Weak transcription Right Ventricle heart
14 chr5:9522200-9528600 Weak transcription Fetal Muscle Leg muscle
15 chr5:9522200-9529200 Weak transcription Fetal Muscle Trunk muscle
16 chr5:9522400-9525400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
17 chr5:9522400-9526600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
18 chr5:9522600-9529400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
19 chr5:9522800-9527800 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
20 chr5:9523200-9524000 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
21 chr5:9523200-9524000 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
22 chr5:9523200-9524000 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
23 chr5:9523200-9524000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
24 chr5:9523200-9524000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
25 chr5:9523200-9524000 Enhancers NH-A brain
26 chr5:9523200-9524000 Enhancers NHLF lung
27 chr5:9523200-9524200 Enhancers Muscle Satellite Cultured Cells --
28 chr5:9523200-9524400 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
29 chr5:9523400-9523800 Weak transcription Cortex derived primary cultured neurospheres brain
30 chr5:9523400-9524000 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
31 chr5:9523400-9524000 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
32 chr5:9523400-9524000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
33 chr5:9523400-9524000 Enhancers Fetal Kidney kidney
34 chr5:9523400-9524200 Enhancers Osteobl bone
35 chr5:9523400-9524600 Enhancers NHDF-Ad bronchial
36 chr5:9523400-9525200 Weak transcription Sigmoid Colon Sigmoid Colon
37 chr5:9523600-9523800 Weak transcription Pancreatic Islets Pancreatic Islet
38 chr5:9523600-9524000 Enhancers Pancreas Pancrea
39 chr5:9523600-9524000 Enhancers HMEC breast
40 chr5:9523600-9524600 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
41 chr5:9523600-9525800 Genic enhancers Breast Myoepithelial Primary Cells Breast
42 chr5:9523600-9525800 Enhancers Fetal Heart heart
43 chr5:9523600-9528400 Weak transcription Rectal Mucosa Donor 31 rectum

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Last update: Aug 31, 2015