Variant report

Variant	rs4651218
Chromosome Location	chr1:184510798-184510799
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:184509375..184512028-chr1:184512395..184515613,3	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1007224	0.84[EUR][1000 genomes]
rs10797974	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10797977	0.85[EUR][1000 genomes]
rs10911606	0.81[EUR][1000 genomes]
rs10911613	0.87[ASN][1000 genomes]
rs10911614	0.84[ASN][1000 genomes]
rs12125349	0.80[EUR][1000 genomes]
rs12134281	0.91[ASN][1000 genomes]
rs1339563	0.83[EUR][1000 genomes]
rs1339564	0.84[EUR][1000 genomes]
rs1339565	0.85[EUR][1000 genomes]
rs1339566	0.81[EUR][1000 genomes]
rs1339567	0.84[EUR][1000 genomes]
rs1339573	0.84[ASN][1000 genomes]
rs1416751	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1416752	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1569843	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1569844	0.82[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1572767	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1856562	0.84[ASN][1000 genomes]
rs1884200	0.82[EUR][1000 genomes]
rs1985703	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs1999996	0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2038308	0.85[EUR][1000 genomes]
rs2144294	0.81[EUR][1000 genomes]
rs2890014	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2890015	0.84[EUR][1000 genomes]
rs4650667	0.85[EUR][1000 genomes]
rs4651213	0.94[EUR][1000 genomes]
rs4651217	0.81[EUR][1000 genomes]
rs4651219	0.85[EUR][1000 genomes]
rs4651221	0.84[AMR][1000 genomes]
rs6424958	0.84[ASN][1000 genomes]
rs6424959	0.84[ASN][1000 genomes]
rs6667692	0.84[ASN][1000 genomes]
rs6674023	0.84[ASN][1000 genomes]
rs6674115	0.84[ASN][1000 genomes]
rs749214	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7520690	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7533466	0.81[EUR][1000 genomes]
rs7544240	0.81[EUR][1000 genomes]
rs946547	0.87[ASN][1000 genomes]
rs9970984	0.85[EUR][1000 genomes]
rs9970990	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530079	chr1:183797938-184639971	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	esv2756618	chr1:184393343-184674343	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184502400-184517000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:184502400-184520200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr1:184502600-184527200	Weak transcription	Fetal Brain Female	brain
4	chr1:184503200-184514600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:184503200-184516400	Weak transcription	Fetal Brain Male	brain
6	chr1:184503400-184515800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr1:184503400-184520400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr1:184504200-184522600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr1:184505400-184511400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr1:184505600-184511600	Weak transcription	Fetal Muscle Trunk	muscle
11	chr1:184505600-184511800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:184505800-184510800	Weak transcription	Fetal Intestine Large	intestine
13	chr1:184505800-184511200	Weak transcription	Left Ventricle	heart
14	chr1:184505800-184511200	Weak transcription	Right Ventricle	heart
15	chr1:184505800-184511400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr1:184505800-184511400	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr1:184505800-184513000	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr1:184505800-184514600	Weak transcription	NHLF	lung
19	chr1:184505800-184515000	Weak transcription	Duodenum Mucosa	Duodenum
20	chr1:184505800-184515800	Weak transcription	Lung	lung
21	chr1:184505800-184516000	Weak transcription	Pancreas	Pancrea
22	chr1:184505800-184518200	Weak transcription	Gastric	stomach
23	chr1:184505800-184524000	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr1:184505800-184530800	Weak transcription	Rectal Smooth Muscle	rectum
25	chr1:184505800-184531600	Weak transcription	Fetal Stomach	stomach
26	chr1:184506200-184520600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr1:184507200-184511000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr1:184508000-184511200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr1:184508000-184516600	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr1:184508400-184511000	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr1:184508400-184511200	Weak transcription	Primary hematopoietic stem cells	blood
32	chr1:184508400-184511600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr1:184508400-184514000	Weak transcription	Esophagus	oesophagus
34	chr1:184508400-184515000	Weak transcription	NHDF-Ad	bronchial
35	chr1:184508600-184511400	Weak transcription	Fetal Muscle Leg	muscle
36	chr1:184508600-184514200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr1:184509200-184510800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr1:184509800-184513800	Weak transcription	Psoas Muscle	Psoas
39	chr1:184510200-184510800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr1:184510200-184510800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr1:184510200-184510800	Enhancers	NHEK	skin
42	chr1:184510200-184511200	Enhancers	Placenta Amnion	Placenta Amnion
43	chr1:184510200-184511800	Enhancers	Colon Smooth Muscle	Colon
44	chr1:184510200-184512000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr1:184510400-184511600	Enhancers	Breast Myoepithelial Primary Cells	Breast
46	chr1:184510600-184511000	Enhancers	Right Atrium	heart
47	chr1:184510600-184511400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr1:184510600-184511400	Enhancers	Stomach Smooth Muscle	stomach

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