Variant report

Variant	rs4652124
Chromosome Location	chr1:175770183-175770184
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10913080	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10913081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10913082	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12060737	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12063660	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12063716	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12082852	1.00[ASN][1000 genomes]
rs12089664	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16828536	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16849183	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4652120	1.00[ASN][1000 genomes]
rs4652122	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4652123	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4652127	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs57883023	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58121069	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59292975	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59691682	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61169187	0.82[EUR][1000 genomes]
rs61306614	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61569088	1.00[ASN][1000 genomes]
rs6686537	0.92[ASN][1000 genomes]
rs72709205	0.82[EUR][1000 genomes]
rs72709207	0.82[EUR][1000 genomes]
rs72709212	0.82[EUR][1000 genomes]
rs72709218	0.82[EUR][1000 genomes]
rs72709224	0.82[EUR][1000 genomes]
rs72709226	0.82[EUR][1000 genomes]
rs72709228	0.82[EUR][1000 genomes]
rs72709229	0.82[EUR][1000 genomes]
rs72709230	0.82[EUR][1000 genomes]
rs72709231	0.82[EUR][1000 genomes]
rs72709233	0.82[EUR][1000 genomes]
rs72709234	0.82[EUR][1000 genomes]
rs72709236	0.82[EUR][1000 genomes]
rs72709237	0.82[EUR][1000 genomes]
rs72709245	0.82[EUR][1000 genomes]
rs72709246	0.82[EUR][1000 genomes]
rs72709250	0.82[EUR][1000 genomes]
rs72709253	0.82[EUR][1000 genomes]
rs72709257	0.82[EUR][1000 genomes]
rs72709260	0.82[EUR][1000 genomes]
rs72709261	0.82[EUR][1000 genomes]
rs72709265	0.82[EUR][1000 genomes]
rs72709266	0.82[EUR][1000 genomes]
rs72709269	0.82[EUR][1000 genomes]
rs72709270	0.82[EUR][1000 genomes]
rs72709271	0.82[EUR][1000 genomes]
rs72709274	0.82[EUR][1000 genomes]
rs72709275	0.82[EUR][1000 genomes]
rs72709276	0.82[EUR][1000 genomes]
rs72709279	0.82[EUR][1000 genomes]
rs72709282	0.82[EUR][1000 genomes]
rs72709283	0.82[EUR][1000 genomes]
rs72709285	0.82[EUR][1000 genomes]
rs72709287	0.82[EUR][1000 genomes]
rs72709289	0.82[EUR][1000 genomes]
rs72709290	0.82[EUR][1000 genomes]
rs72709292	0.82[EUR][1000 genomes]
rs72709293	0.82[EUR][1000 genomes]
rs72709295	0.82[EUR][1000 genomes]
rs72709296	0.82[EUR][1000 genomes]
rs72709299	0.82[EUR][1000 genomes]
rs72709300	0.82[EUR][1000 genomes]
rs72709302	0.82[EUR][1000 genomes]
rs72711103	0.82[EUR][1000 genomes]
rs72711105	0.82[EUR][1000 genomes]
rs72711106	0.82[EUR][1000 genomes]
rs72711107	0.82[EUR][1000 genomes]
rs72711108	0.82[EUR][1000 genomes]
rs72711109	0.82[EUR][1000 genomes]
rs72711110	0.82[EUR][1000 genomes]
rs72711111	0.82[EUR][1000 genomes]
rs72711113	0.82[EUR][1000 genomes]
rs72727638	0.82[EUR][1000 genomes]
rs73042139	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73042159	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73046209	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv548245	chr1:175430855-175772378	ZNF genes & repeats Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv33328	chr1:175446583-175910001	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv831959	chr1:175576384-175776729	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv872560	chr1:175648631-175869554	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175765600-175770600	Weak transcription	Fetal Heart	heart
2	chr1:175767600-175772400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:175769400-175772600	Enhancers	Fetal Muscle Leg	muscle
4	chr1:175770000-175772600	Enhancers	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links