Variant report

Variant	rs73046209
Chromosome Location	chr1:175811177-175811178
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:175803143..175807498-chr1:175810197..175814751,4	K562	blood:
2	chr1:175810148..175812202-chr1:175822925..175825364,2	K562	blood:
3	chr1:175811108..175813119-chr1:176318373..176320354,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10913080	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10913081	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10913082	0.95[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12060737	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12063660	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12063716	0.92[ASN][1000 genomes]
rs12082852	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12089664	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16828536	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16849183	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4652120	1.00[ASN][1000 genomes]
rs4652122	1.00[ASN][1000 genomes]
rs4652123	1.00[ASN][1000 genomes]
rs4652124	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4652127	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57883023	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58121069	1.00[ASN][1000 genomes]
rs59292975	1.00[ASN][1000 genomes]
rs59691682	1.00[ASN][1000 genomes]
rs61306614	1.00[ASN][1000 genomes]
rs61569088	1.00[ASN][1000 genomes]
rs6686537	0.92[ASN][1000 genomes]
rs73042139	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73042159	0.94[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv33328	chr1:175446583-175910001	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv872560	chr1:175648631-175869554	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:175806600-175817200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:175808200-175811600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:175808800-175812000	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr1:175808800-175812000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr1:175809000-175812000	Enhancers	Fetal Muscle Leg	muscle
6	chr1:175809400-175811600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:175809400-175811800	Enhancers	Fetal Brain Female	brain
8	chr1:175809400-175811800	Enhancers	Fetal Intestine Small	intestine
9	chr1:175809400-175814800	Enhancers	Fetal Intestine Large	intestine
10	chr1:175809600-175811400	Enhancers	HepG2	liver
11	chr1:175809600-175811600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:175810200-175811200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr1:175810200-175811200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:175810400-175811200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr1:175810400-175811200	Enhancers	Colonic Mucosa	Colon
16	chr1:175810400-175811400	Enhancers	Brain Germinal Matrix	brain
17	chr1:175810400-175812400	Enhancers	Fetal Brain Male	brain
18	chr1:175810600-175811200	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr1:175810600-175811400	Flanking Active TSS	Hela-S3	cervix
20	chr1:175810600-175811600	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr1:175810600-175811600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr1:175810600-175811800	Enhancers	H1 Cell Line	embryonic stem cell
23	chr1:175810600-175811800	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr1:175810600-175812000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr1:175810800-175811600	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr1:175810800-175811800	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr1:175810800-175812000	Enhancers	Pancreatic Islets	Pancreatic Islet
28	chr1:175811000-175811400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr1:175811000-175811400	Weak transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links