Variant report

Variant	rs4655240
Chromosome Location	chr1:214419250-214419251
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1147675	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1147677	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4655325	0.90[AMR][1000 genomes]
rs6419472	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6540815	0.82[AMR][1000 genomes]
rs6682783	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7415287	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7417393	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7515095	0.90[ASN][1000 genomes]
rs7529196	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs766499	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214412200-214421000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:214417600-214419400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr1:214417800-214432800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:214419000-214419400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:214419000-214419400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr1:214419200-214419400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:214419200-214421200	Weak transcription	HUES64 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links