Variant report

Variant	rs6540815
Chromosome Location	chr1:214437562-214437563
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1134647	1.00[ASW][hapmap];1.00[AFR][1000 genomes]
rs1147675	0.84[AMR][1000 genomes]
rs1147677	0.87[AMR][1000 genomes]
rs12124666	1.00[ASW][hapmap];1.00[AFR][1000 genomes]
rs4655240	0.82[AMR][1000 genomes]
rs4655325	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6419474	0.85[MKK][hapmap]
rs7417393	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7419021	1.00[ASW][hapmap]
rs766499	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];1.00[MKK][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214435400-214437600	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr1:214435400-214437800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr1:214435800-214444800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr1:214436200-214438000	Weak transcription	Fetal Heart	heart
5	chr1:214437000-214437800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:214437200-214438600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:214437200-214438600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr1:214437200-214439200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr1:214437400-214438000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr1:214437400-214438600	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:214437400-214438600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr1:214437400-214438600	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr1:214437400-214438600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr1:214437400-214453200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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