Variant report

Variant	rs4656290
Chromosome Location	chr1:158394959-158394960
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11800388	1.00[AMR][1000 genomes]
rs11801809	1.00[CEU][hapmap]
rs11810515	1.00[EUR][1000 genomes]
rs11812001	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16840385	1.00[CEU][hapmap]
rs4657038	1.00[AMR][1000 genomes]
rs73019734	1.00[EUR][1000 genomes]
rs7519343	1.00[EUR][1000 genomes]
rs7529045	1.00[CEU][hapmap];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872479	chr1:158118787-158484285	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv872480	chr1:158153526-158450238	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv998569	chr1:158317392-158443389	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158392800-158395000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr1:158394000-158396200	Enhancers	Dnd41	blood
3	chr1:158394800-158395000	Enhancers	Thymus	Thymus
4	chr1:158394800-158395200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr1:158394800-158396000	Enhancers	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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