Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10489838	1.00[CEU][hapmap]
rs11800388	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11801809	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11812001	0.85[AMR][1000 genomes]
rs16830483	1.00[CEU][hapmap]
rs16840385	1.00[CEU][hapmap]
rs16840418	1.00[CEU][hapmap]
rs16840429	1.00[CEU][hapmap]
rs41523545	1.00[CEU][hapmap]
rs4656290	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs57896727	1.00[EUR][1000 genomes]
rs61739693	1.00[EUR][1000 genomes]
rs73027703	1.00[EUR][1000 genomes]
rs73027714	1.00[EUR][1000 genomes]
rs73027724	0.84[EUR][1000 genomes]
rs73027726	1.00[EUR][1000 genomes]
rs73027733	1.00[EUR][1000 genomes]
rs73027737	1.00[EUR][1000 genomes]
rs73027780	1.00[EUR][1000 genomes]
rs73027798	1.00[EUR][1000 genomes]
rs7529045	1.00[CEU][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872479	chr1:158118787-158484285	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv872480	chr1:158153526-158450238	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv998569	chr1:158317392-158443389	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv946440	chr1:158424123-158429628	Strong transcription Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158424200-158430800	Weak transcription	Fetal Thymus	thymus
2	chr1:158425200-158430800	Weak transcription	Thymus	Thymus

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