Variant report

Variant	rs73027798
Chromosome Location	chr1:158465964-158465965
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr1:158465900-158466050	RPTEC	kidney:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:158465963-158466013	HIPEpiC	eye:	n/a
2	chr1:158465963-158466013	HUVEC	blood vessel:	n/a
3	chr1:158465963-158466013	PANC-1	pancreas:	n/a
4	chr1:158465963-158466013	HAEpiC	amniotic membrane:	n/a
5	chr1:158465963-158466013	U87	brain:	n/a
6	chr1:158465963-158466013	HepG2	liver:	n/a
7	chr1:158465963-158466013	AG09309	skin:	n/a
8	chr1:158465963-158466013	HL-60	blood:	n/a
9	chr1:158465963-158466013	SK-N-SH_RA	brain:	n/a
10	chr1:158465963-158466013	PFSK-1	brain:	n/a
11	chr1:158465963-158466013	HPAEpiC	pulmonary alveolar:	n/a
12	chr1:158465963-158466013	Hepatocyte	liver:	n/a
13	chr1:158465963-158466013	IMR90	lung:	fetal
14	chr1:158465963-158466013	BE2_C	brain:	n/a
15	chr1:158465963-158466013	AG10803	skin:	n/a
16	chr1:158465963-158466013	HCPEpiC	choroid plexus:	n/a
17	chr1:158465963-158466013	T-47D	breast:	n/a
18	chr1:158465963-158466013	Jurkat	blood:	n/a
19	chr1:158465963-158466013	GM19239	blood:	n/a
20	chr1:158465963-158466013	AG09319	gingival:	n/a
21	chr1:158465963-158466013	HEK293	kidney:	embryo
22	chr1:158465963-158466013	LNCaP	prostate:	n/a
23	chr1:158465963-158466013	HRCEpiC	kidney:	n/a
24	chr1:158465963-158466013	HMEC	breast:	n/a
25	chr1:158465963-158466013	AG04450	lung:	fetal
26	chr1:158465963-158466013	H1-hESC	embryonic stem cell:	embryo
27	chr1:158465963-158466013	NT2-D1	testis:	n/a
28	chr1:158465963-158466013	AoSMC	blood vessel:	n/a
29	chr1:158465963-158466013	SK-N-SH	brain:	n/a
30	chr1:158465963-158466013	NB4	blood:	n/a
31	chr1:158465963-158466013	MCF10A-Er-Src	breast:	n/a
32	chr1:158465963-158466013	HCF	heart:	n/a
33	chr1:158465963-158466013	CMK	blood:	n/a
34	chr1:158465963-158466013	K562	blood:	n/a
35	chr1:158465963-158466013	AG04449	skin:	fetal
36	chr1:158465963-158466013	HNPCEpiC	eye:	n/a
37	chr1:158465963-158466013	Caco-2	colon:	n/a
38	chr1:158465963-158466013	HCT-116	colon:	n/a
39	chr1:158465963-158466013	ovcar-3	ovarian:	n/a
40	chr1:158465963-158466013	RPTEC	kidney:	n/a
41	chr1:158465963-158466013	GM12891	blood:	n/a
42	chr1:158465963-158466013	ProgFib	skin:	n/a
43	chr1:158465963-158466013	NHDF-neo	bronchial:	n/a
44	chr1:158465963-158466013	HEEpiC	esophagus:	n/a
45	chr1:158465963-158466013	HRPEpiC	eye:	n/a
46	chr1:158465963-158466013	HRE	kidney:	n/a
47	chr1:158465963-158466013	SKMC	muscle:	n/a
48	chr1:158465963-158466013	PrEC	prostate:	n/a
49	chr1:158465963-158466013	SK-N-MC	brain:	n/a
50	chr1:158465963-158466013	SAEC	small airway:	n/a

No data

Variant related genes	Relation type
ENSG00000236656	TF binding region
ENSG00000236656	CpG island

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11800388	1.00[EUR][1000 genomes]
rs11801809	1.00[EUR][1000 genomes]
rs4474244	0.82[AFR][1000 genomes]
rs4657038	1.00[EUR][1000 genomes]
rs57896727	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61739693	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73027703	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73027706	0.82[AFR][1000 genomes]
rs73027714	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73027724	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73027726	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73027733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73027737	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73027780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7529045	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872479	chr1:158118787-158484285	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1001046	chr1:158461563-158503338	Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:158465400-158466200	Flanking Active TSS	Dnd41	blood
2	chr1:158465800-158466000	Flanking Active TSS	Thymus	Thymus
3	chr1:158465800-158466200	Enhancers	Fetal Thymus	thymus

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