Variant report

Variant	rs4657397
Chromosome Location	chr1:165086496-165086497
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12121987	1.00[EUR][1000 genomes]
rs12140708	1.00[EUR][1000 genomes]
rs12410807	0.81[EUR][1000 genomes]
rs1506945	1.00[AFR][1000 genomes]
rs4656436	1.00[CEU][hapmap]
rs4657417	1.00[AFR][1000 genomes]
rs6660972	1.00[CEU][hapmap]
rs6670741	1.00[AFR][1000 genomes]
rs7542990	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869712	chr1:164866810-165299085	Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1001453	chr1:165060936-165097817	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165085000-165086600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:165085000-165087000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr1:165085000-165087200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:165085600-165087000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr1:165085600-165087000	Enhancers	HMEC	breast
6	chr1:165085800-165087000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
7	chr1:165085800-165087000	Enhancers	NH-A	brain
8	chr1:165086000-165087000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:165086000-165087000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr1:165086200-165086600	Enhancers	Placenta Amnion	Placenta Amnion
11	chr1:165086200-165086800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:165086200-165087000	Enhancers	Esophagus	oesophagus
13	chr1:165086400-165086600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
14	chr1:165086400-165086600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr1:165086400-165086600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr1:165086400-165086600	Bivalent Enhancer	Fetal Lung	lung
17	chr1:165086400-165086800	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr1:165086400-165086800	Bivalent Enhancer	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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