Variant report

Variant	rs4657417
Chromosome Location	chr1:165204754-165204755
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:165202104..165205035-chr1:165225305..165227003,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1506945	1.00[AFR][1000 genomes]
rs4657397	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869712	chr1:164866810-165299085	Bivalent Enhancer Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165204000-165204800	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr1:165204000-165205800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
3	chr1:165204000-165205800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
4	chr1:165204200-165204800	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:165204200-165204800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
6	chr1:165204200-165205200	Bivalent/Poised TSS	Primary hematopoietic stem cells	blood
7	chr1:165204200-165205600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
8	chr1:165204200-165205600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
9	chr1:165204200-165205600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
10	chr1:165204200-165205600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
11	chr1:165204200-165205800	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr1:165204400-165204800	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
13	chr1:165204400-165204800	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr1:165204400-165204800	Flanking Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:165204400-165204800	Flanking Bivalent TSS/Enh	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr1:165204400-165204800	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr1:165204400-165204800	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr1:165204400-165204800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr1:165204400-165204800	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
20	chr1:165204400-165204800	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
21	chr1:165204400-165204800	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
22	chr1:165204400-165204800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
23	chr1:165204400-165204800	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
24	chr1:165204400-165204800	Flanking Active TSS	Pancreas	Pancrea
25	chr1:165204400-165204800	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
26	chr1:165204400-165204800	Flanking Bivalent TSS/Enh	HepG2	liver
27	chr1:165204400-165205000	Bivalent/Poised TSS	Fetal Kidney	kidney
28	chr1:165204400-165205000	Bivalent Enhancer	Placenta	Placenta
29	chr1:165204400-165205200	Bivalent Enhancer	Lung	lung
30	chr1:165204400-165205400	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr1:165204400-165205400	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
32	chr1:165204400-165205400	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
33	chr1:165204400-165205400	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
34	chr1:165204400-165205600	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
35	chr1:165204400-165205600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr1:165204400-165205600	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
37	chr1:165204400-165205600	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
38	chr1:165204400-165205800	Bivalent/Poised TSS	Brain Anterior Caudate	brain
39	chr1:165204400-165205800	Active TSS	Right Ventricle	heart
40	chr1:165204600-165204800	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr1:165204600-165204800	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr1:165204600-165204800	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
43	chr1:165204600-165204800	Bivalent Enhancer	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr1:165204600-165204800	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
45	chr1:165204600-165204800	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr1:165204600-165204800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr1:165204600-165204800	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr1:165204600-165204800	Bivalent Enhancer	Primary mononuclear cells fromperipheralblood	Blood
49	chr1:165204600-165204800	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
50	chr1:165204600-165204800	Flanking Bivalent TSS/Enh	Brain Dorsolateral Prefrontal Cortex	brain

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