Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12116751	0.81[ASN][1000 genomes]
rs12131305	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12134206	0.94[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12135345	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12138394	0.81[ASN][1000 genomes]
rs12144307	0.98[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12726685	0.85[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12737948	0.86[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12751433	0.81[ASN][1000 genomes]
rs1339319	0.86[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs1887629	0.81[ASN][1000 genomes]
rs34195829	0.88[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs34597749	0.89[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs35418296	0.86[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs4657874	0.81[ASN][1000 genomes]
rs60581324	0.81[ASN][1000 genomes]
rs61831962	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61831963	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6428182	0.88[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6678275	0.87[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6695669	0.81[ASN][1000 genomes]
rs6703565	0.81[ASN][1000 genomes]
rs71642926	0.86[AFR][1000 genomes]
rs7512670	0.80[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7524134	0.88[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs7524872	0.81[ASN][1000 genomes]
rs7550219	0.83[AFR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832170	chr1:193426455-193596182	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:193578200-193579000	Enhancers	Liver	Liver
2	chr1:193578200-193579400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr1:193578400-193579000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
4	chr1:193578400-193579200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr1:193578600-193579000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr1:193578800-193579400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:193578800-193579600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search: