Variant report

Variant	rs71642926
Chromosome Location	chr1:193599019-193599020
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12060042	0.86[ASN][1000 genomes]
rs12116751	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12131305	0.88[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs12134206	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12135345	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12138394	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12144307	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12726685	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12737948	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12751433	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1339319	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1887629	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34195829	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34597749	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35418296	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4657872	0.86[AFR][1000 genomes]
rs4657874	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60581324	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61831962	0.81[ASN][1000 genomes]
rs61831963	0.81[ASN][1000 genomes]
rs6428182	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6678275	0.99[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6695669	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6703565	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7512670	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7524134	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7524872	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7550219	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008266	chr1:193550185-194481053	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:193586200-193603200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr1:193594800-193599200	Weak transcription	Liver	Liver
3	chr1:193596800-193603800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr1:193598400-193599200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr1:193598400-193599600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:193598600-193599600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr1:193598600-193599600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr1:193598600-193601800	Weak transcription	Colon Smooth Muscle	Colon
9	chr1:193598800-193599400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr1:193598800-193599400	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr1:193598800-193599400	Enhancers	Primary hematopoietic stem cells	blood
12	chr1:193598800-193599400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr1:193598800-193599400	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr1:193598800-193599600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr1:193598800-193599600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr1:193599000-193599400	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr1:193599000-193599400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr1:193599000-193599400	Enhancers	Brain Hippocampus Middle	brain
19	chr1:193599000-193599400	Flanking Active TSS	HUVEC	blood vessel
20	chr1:193599000-193599600	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr1:193599000-193599600	Enhancers	HSMMtube	muscle
22	chr1:193599000-193599800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links