Variant report

Variant	rs4662701
Chromosome Location	chr2:127733627-127733628
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10192573	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4662693	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4662700	1.00[AMR][1000 genomes]
rs4663067	1.00[AMR][1000 genomes]
rs4663068	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4663069	1.00[AMR][1000 genomes]
rs4663084	1.00[AMR][1000 genomes]
rs6431202	1.00[AMR][1000 genomes]
rs7423353	1.00[AMR][1000 genomes]
rs7557670	1.00[AMR][1000 genomes]
rs9287562	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999422	chr2:127464647-127956543	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1004930	chr2:127477369-127938234	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv834365	chr2:127616996-127793863	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv834366	chr2:127633714-127784692	Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv583031	chr2:127732462-127758448	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:127730200-127733800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:127730200-127735600	Weak transcription	Brain Hippocampus Middle	brain
3	chr2:127732000-127734400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr2:127733000-127733800	Enhancers	Fetal Lung	lung
5	chr2:127733000-127734400	Enhancers	Fetal Muscle Leg	muscle
6	chr2:127733000-127734400	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr2:127733200-127734200	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr2:127733600-127733800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr2:127733600-127734000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr2:127733600-127734000	Enhancers	Fetal Muscle Trunk	muscle
11	chr2:127733600-127734200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr2:127733600-127734200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
13	chr2:127733600-127734200	Enhancers	Placenta	Placenta
14	chr2:127733600-127734200	Flanking Active TSS	HepG2	liver
15	chr2:127733600-127734400	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr2:127733600-127735800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr2:127733600-127737000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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