Variant report

Variant	rs7557670
Chromosome Location	chr2:127734556-127734557
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10192573	1.00[AMR][1000 genomes]
rs4662693	1.00[AMR][1000 genomes]
rs4662700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4662701	1.00[AMR][1000 genomes]
rs4663067	1.00[AMR][1000 genomes]
rs4663068	1.00[AMR][1000 genomes]
rs4663069	1.00[AMR][1000 genomes]
rs4663084	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6431202	1.00[AMR][1000 genomes]
rs7423353	1.00[AMR][1000 genomes]
rs9287562	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999422	chr2:127464647-127956543	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1004930	chr2:127477369-127938234	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv834365	chr2:127616996-127793863	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv834366	chr2:127633714-127784692	Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv583031	chr2:127732462-127758448	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:127730200-127735600	Weak transcription	Brain Hippocampus Middle	brain
2	chr2:127733600-127735800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:127733600-127737000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:127733800-127739000	Weak transcription	Fetal Lung	lung
5	chr2:127734200-127734800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr2:127734200-127735600	Weak transcription	Brain Anterior Caudate	brain
7	chr2:127734400-127734800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr2:127734400-127734800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr2:127734400-127735600	Weak transcription	HepG2	liver
10	chr2:127734400-127739000	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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