Variant report

Variant	rs4667265
Chromosome Location	chr2:190011156-190011157
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:190010189..190015498-chr2:190084856..190090227,6	MCF-7	breast:
2	chr2:190010984..190012926-chr2:190016362..190018149,2	MCF-7	breast:
3	chr2:190009672..190012022-chr2:190013426..190016252,2	K562	blood:
4	chr2:190008421..190011287-chr2:190151088..190152689,2	MCF-7	breast:
5	chr2:190006464..190008527-chr2:190011142..190013874,2	MCF-7	breast:

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10931400	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10931404	0.85[EUR][1000 genomes]
rs11681286	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11691604	0.84[CEU][hapmap];0.81[JPT][hapmap]
rs12104769	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12105389	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12611950	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12615823	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12618316	0.82[AFR][1000 genomes]
rs12618438	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12621035	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12621806	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12621939	0.89[EUR][1000 genomes]
rs12991770	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12993719	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12995956	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12999122	0.90[EUR][1000 genomes]
rs12999996	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13004722	0.81[EUR][1000 genomes]
rs13005652	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13005714	0.85[YRI][hapmap];0.81[AFR][1000 genomes]
rs13005821	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13011374	0.83[EUR][1000 genomes]
rs13011485	0.82[EUR][1000 genomes]
rs13012327	0.85[EUR][1000 genomes]
rs13012649	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13015283	0.92[CEU][hapmap];0.81[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13016231	0.90[EUR][1000 genomes]
rs13017413	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13019076	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13020999	0.87[YRI][hapmap];0.82[AFR][1000 genomes]
rs13021508	0.82[EUR][1000 genomes]
rs13022633	0.85[EUR][1000 genomes]
rs13028967	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13029705	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13030984	0.85[YRI][hapmap]
rs13031211	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13031549	0.93[CEU][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes]
rs13033421	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1356162	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1356163	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1356164	1.00[CEU][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1356165	1.00[CEU][hapmap];0.81[JPT][hapmap];0.84[YRI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1356167	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1356168	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1399991	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1399992	0.85[EUR][1000 genomes]
rs1464135	0.80[YRI][hapmap]
rs1515864	0.87[YRI][hapmap];0.84[AFR][1000 genomes]
rs1515874	0.85[EUR][1000 genomes]
rs1515876	0.85[EUR][1000 genomes]
rs1568334	0.82[EUR][1000 genomes]
rs1878085	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1949327	0.85[YRI][hapmap]
rs1949484	0.90[EUR][1000 genomes]
rs1965422	0.96[CEU][hapmap];0.92[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2138373	0.83[YRI][hapmap]
rs2138374	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2222256	0.90[EUR][1000 genomes]
rs2351627	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2351636	0.81[EUR][1000 genomes]
rs35475196	0.85[EUR][1000 genomes]
rs36019389	0.81[AFR][1000 genomes]
rs3914778	0.90[EUR][1000 genomes]
rs4233801	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4417749	0.85[YRI][hapmap];0.81[AFR][1000 genomes]
rs4428040	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4667264	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4667272	0.90[EUR][1000 genomes]
rs4667274	0.86[EUR][1000 genomes]
rs4667276	0.82[EUR][1000 genomes]
rs4667277	0.82[EUR][1000 genomes]
rs4998559	1.00[CEU][hapmap];0.81[JPT][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60124911	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62182416	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6434324	0.84[YRI][hapmap]
rs6434339	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs6708419	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6714088	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6719104	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6737071	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6749559	0.87[YRI][hapmap];0.81[AFR][1000 genomes]
rs7419888	1.00[CEU][hapmap];0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7560973	0.87[YRI][hapmap];0.81[AFR][1000 genomes]
rs7561002	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7564611	0.85[EUR][1000 genomes]
rs7576165	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs7587147	0.90[EUR][1000 genomes]
rs7587956	0.90[EUR][1000 genomes]
rs7607133	0.86[EUR][1000 genomes]
rs7609495	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv875613	chr2:189999011-190324685	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189968600-190012000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr2:189981400-190014800	Weak transcription	Fetal Stomach	stomach
3	chr2:189984000-190016800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr2:189993800-190017000	Weak transcription	Ovary	ovary
5	chr2:190000400-190013600	Weak transcription	Left Ventricle	heart
6	chr2:190003600-190014600	Weak transcription	Colon Smooth Muscle	Colon
7	chr2:190006600-190011800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr2:190008000-190014800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr2:190009000-190011400	Weak transcription	HSMMtube	muscle
10	chr2:190009000-190012000	Enhancers	A549	lung
11	chr2:190009000-190016000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr2:190009200-190012200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr2:190009200-190014400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr2:190009400-190014800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr2:190009600-190013200	Genic enhancers	Osteobl	bone
16	chr2:190009600-190014800	Weak transcription	Aorta	Aorta
17	chr2:190009800-190011400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr2:190009800-190013800	Weak transcription	Adipose Nuclei	Adipose
19	chr2:190009800-190014600	Weak transcription	NH-A	brain
20	chr2:190009800-190017200	Weak transcription	Fetal Muscle Leg	muscle
21	chr2:190010200-190013200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr2:190010200-190013800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr2:190010400-190011600	Enhancers	Fetal Lung	lung
24	chr2:190010600-190011200	Genic enhancers	HSMM	muscle
25	chr2:190010600-190011400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr2:190010800-190011200	Flanking Active TSS	NHDF-Ad	bronchial
27	chr2:190010800-190012400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr2:190010800-190013000	Enhancers	Muscle Satellite Cultured Cells	--
29	chr2:190011000-190011400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr2:190011000-190012000	Enhancers	NHLF	lung
31	chr2:190011000-190014800	Weak transcription	Rectal Smooth Muscle	rectum

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