Variant report

Variant	rs62182416
Chromosome Location	chr2:189997475-189997476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10931400	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11681286	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12104769	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12105389	0.92[EUR][1000 genomes]
rs12611950	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12615823	0.80[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12618316	0.81[AFR][1000 genomes]
rs12618438	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12621035	0.89[EUR][1000 genomes]
rs12621806	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12621939	0.83[EUR][1000 genomes]
rs12991770	0.89[EUR][1000 genomes]
rs12993719	0.88[EUR][1000 genomes]
rs12995956	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12999122	0.85[EUR][1000 genomes]
rs12999996	0.91[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs13005652	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs13005821	0.80[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs13012649	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13013089	0.81[AFR][1000 genomes]
rs13015283	0.85[EUR][1000 genomes]
rs13016231	0.85[EUR][1000 genomes]
rs13017413	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs13019076	0.80[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs13020999	0.81[AFR][1000 genomes]
rs13028967	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs13029705	0.93[EUR][1000 genomes]
rs13030984	0.81[AFR][1000 genomes]
rs13031211	0.89[EUR][1000 genomes]
rs13033421	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1356162	0.93[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1356163	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1356164	0.93[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1356165	0.89[EUR][1000 genomes]
rs1356167	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1356168	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1399991	0.91[EUR][1000 genomes]
rs1878085	0.86[EUR][1000 genomes]
rs1949327	0.81[AFR][1000 genomes]
rs1949484	0.85[EUR][1000 genomes]
rs1965422	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs2138373	0.81[AFR][1000 genomes]
rs2138374	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2222256	0.85[EUR][1000 genomes]
rs2351627	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3914778	0.85[EUR][1000 genomes]
rs4233801	0.90[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs4428040	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4667264	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4667265	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4667272	0.85[EUR][1000 genomes]
rs4667274	0.80[EUR][1000 genomes]
rs4998559	0.95[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs60124911	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6708419	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6714088	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6719104	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6737071	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7419888	0.89[EUR][1000 genomes]
rs7561002	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7587147	0.85[EUR][1000 genomes]
rs7587956	0.85[EUR][1000 genomes]
rs7606337	0.81[AFR][1000 genomes]
rs7607133	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533029	chr2:189812229-190554339	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189968600-190012000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr2:189974800-190007600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:189981200-189998000	Weak transcription	Fetal Muscle Leg	muscle
4	chr2:189981400-190014800	Weak transcription	Fetal Stomach	stomach
5	chr2:189982400-190005800	Weak transcription	Fetal Kidney	kidney
6	chr2:189984000-190016800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr2:189985400-190000200	Weak transcription	Fetal Lung	lung
8	chr2:189986000-190008800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr2:189993000-189998200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr2:189993200-189999800	Weak transcription	Colon Smooth Muscle	Colon
11	chr2:189993800-189997600	Enhancers	Osteobl	bone
12	chr2:189993800-190007400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr2:189993800-190017000	Weak transcription	Ovary	ovary
14	chr2:189994200-190010600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr2:189994400-189998200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr2:189995000-189998000	Weak transcription	A549	lung
17	chr2:189995400-190009000	Weak transcription	Adipose Nuclei	Adipose
18	chr2:189996000-190000000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr2:189996000-190008800	Weak transcription	NHLF	lung
20	chr2:189996200-189998200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr2:189996200-189998200	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr2:189996400-189998000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr2:189996400-189998200	Weak transcription	NHDF-Ad	bronchial
24	chr2:189997000-189997800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr2:189997000-189998200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr2:189997000-190008000	Weak transcription	HSMMtube	muscle
27	chr2:189997000-190008600	Weak transcription	NH-A	brain
28	chr2:189997200-189998000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr2:189997400-190002000	Weak transcription	HSMM	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links