Variant report

Variant	rs4670204
Chromosome Location	chr2:37681395-37681396
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs56093982	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62133321	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62133324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62133325	0.95[EUR][1000 genomes]
rs72792882	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs888098	0.97[EUR][1000 genomes]
rs888099	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833814	chr2:37643132-37840247	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv456374	chr2:37669487-37868214	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv470453	chr2:37669487-37868214	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv581473	chr2:37669487-37868214	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37674800-37683600	Weak transcription	Psoas Muscle	Psoas
2	chr2:37676800-37682000	Weak transcription	Fetal Heart	heart
3	chr2:37677000-37683200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr2:37677000-37686400	Weak transcription	Fetal Lung	lung
5	chr2:37677400-37682200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr2:37677600-37681800	Weak transcription	NH-A	brain
7	chr2:37677600-37682000	Weak transcription	Fetal Stomach	stomach
8	chr2:37677600-37683800	Weak transcription	Ovary	ovary
9	chr2:37677800-37682000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr2:37677800-37695400	Weak transcription	Aorta	Aorta
11	chr2:37678000-37682000	Weak transcription	Osteobl	bone
12	chr2:37678200-37682000	Weak transcription	Fetal Kidney	kidney
13	chr2:37678400-37682800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr2:37678400-37683200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr2:37678600-37682800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr2:37678600-37682800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr2:37678600-37683000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr2:37679400-37683200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr2:37679400-37683600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr2:37680000-37682000	Enhancers	HUVEC	blood vessel
21	chr2:37680600-37681400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr2:37680600-37681400	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr2:37680600-37681800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr2:37680600-37682400	Weak transcription	Primary T cells from cord blood	blood
25	chr2:37680600-37683000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr2:37680600-37683400	Weak transcription	Fetal Thymus	thymus
27	chr2:37680600-37683600	Weak transcription	Primary B cells from peripheral blood	blood
28	chr2:37680600-37683800	Weak transcription	K562	blood
29	chr2:37680800-37682000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr2:37680800-37682000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr2:37680800-37682000	Weak transcription	Adipose Nuclei	Adipose
32	chr2:37680800-37683200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr2:37681000-37682000	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr2:37681000-37682200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr2:37681000-37683000	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr2:37681200-37681400	Enhancers	Lung	lung
37	chr2:37681200-37681800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr2:37681200-37682400	Weak transcription	Primary T helper naive cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links