Variant report

Variant	rs4670577
Chromosome Location	chr2:36873317-36873318
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF2	chr2:36873274-36873760	GM12878	blood:	n/a	n/a
2	CTCF	chr2:36873274-36873778	HCT-116	colon:	n/a	n/a
3	SMC3	chr2:36873206-36873752	GM12878	blood:	n/a	n/a
4	ATF3	chr2:36873306-36873764	K562	blood:	n/a	n/a
5	RAD21	chr2:36873289-36873762	H1-hESC	embryonic stem cell:	n/a	n/a
6	ATF2	chr2:36873285-36873766	GM12878	blood:	n/a	n/a
7	MEF2A	chr2:36873299-36873761	K562	blood:	n/a	n/a
8	CTCF	chr2:36873220-36873370	HepG2	liver:	n/a	n/a
9	ATF2	chr2:36873300-36873758	H1-hESC	embryonic stem cell:	n/a	n/a
10	RAD21	chr2:36873276-36873788	MCF-7	breast:	n/a	n/a
11	CBX3	chr2:36873308-36874078	HCT-116	colon:	n/a	n/a
12	CBX3	chr2:36873286-36874221	HCT-116	colon:	n/a	n/a
13	MEF2A	chr2:36873241-36873628	GM12878	blood:	n/a	n/a
14	JUND	chr2:36872929-36873750	K562	blood:	n/a	chr2:36873511-36873520
15	MEF2C	chr2:36873279-36873769	GM12878	blood:	n/a	n/a
16	RAD21	chr2:36873301-36873804	HCT-116	colon:	n/a	n/a
17	RAD21	chr2:36873051-36873986	SK-N-SH	brain:	n/a	n/a
18	CTCF	chr2:36873020-36873804	K562	blood:	n/a	n/a
19	RAD21	chr2:36873303-36873806	ECC-1	luminal epithelium:	n/a	n/a
20	RAD21	chr2:36873251-36873769	HCT-116	colon:	n/a	n/a
21	CTCF	chr2:36873308-36873875	MCF-7	breast:	n/a	n/a
22	JUN	chr2:36872969-36873961	K562	blood:	n/a	chr2:36873507-36873520 chr2:36873511-36873520
23	CTCF	chr2:36872963-36873783	A549	lung:	n/a	n/a
24	CTCF	chr2:36873180-36873330	HUVEC	blood vessel:	n/a	n/a
25	MEF2A	chr2:36873173-36873793	K562	blood:	n/a	n/a
26	RAD21	chr2:36873315-36873882	A549	lung:	n/a	n/a
27	RAD21	chr2:36873300-36873815	HepG2	liver:	n/a	n/a
28	CTCF	chr2:36873028-36873828	SK-N-SH	brain:	n/a	n/a
29	ATF2	chr2:36873297-36873747	H1-hESC	embryonic stem cell:	n/a	n/a
30	JUND	chr2:36873252-36873718	H1-hESC	embryonic stem cell:	n/a	chr2:36873511-36873520
31	SMC3	chr2:36873265-36873992	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
FEZ2	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4233915	1.00[AMR][1000 genomes]
rs4670154	1.00[AMR][1000 genomes]
rs6728533	1.00[AMR][1000 genomes]
rs72870305	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010985	chr2:36707157-36942066	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv535642	chr2:36707157-36942066	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv1007757	chr2:36838387-37011384	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv535643	chr2:36838387-37011384	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv523146	chr2:36849220-36897909	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv526283	chr2:36851264-36880831	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36862600-36877000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr2:36870400-36877200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:36873200-36873600	Enhancers	Adipose Nuclei	Adipose

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