Variant report

Variant	rs6728533
Chromosome Location	chr2:36904328-36904329
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10176373	1.00[EUR][1000 genomes]
rs10179564	1.00[EUR][1000 genomes]
rs1120741	1.00[EUR][1000 genomes]
rs1159961	1.00[EUR][1000 genomes]
rs12618264	1.00[EUR][1000 genomes]
rs2015020	1.00[EUR][1000 genomes]
rs2160330	1.00[EUR][1000 genomes]
rs4233915	1.00[AMR][1000 genomes]
rs4670154	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4670156	1.00[EUR][1000 genomes]
rs4670577	1.00[MKK][hapmap];1.00[AMR][1000 genomes]
rs4670586	1.00[EUR][1000 genomes]
rs59476177	1.00[EUR][1000 genomes]
rs61082903	1.00[EUR][1000 genomes]
rs61565953	1.00[EUR][1000 genomes]
rs6544023	1.00[EUR][1000 genomes]
rs6707637	1.00[EUR][1000 genomes]
rs6741718	1.00[EUR][1000 genomes]
rs6752584	1.00[EUR][1000 genomes]
rs72870305	1.00[AMR][1000 genomes]
rs7573730	1.00[EUR][1000 genomes]
rs7586076	1.00[EUR][1000 genomes]
rs7598592	1.00[EUR][1000 genomes]
rs7599651	1.00[EUR][1000 genomes]
rs7609206	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010985	chr2:36707157-36942066	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv535642	chr2:36707157-36942066	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv1007757	chr2:36838387-37011384	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv535643	chr2:36838387-37011384	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv963871	chr2:36896580-36913813	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36899200-36904600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr2:36903000-36904600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr2:36903200-36905200	Enhancers	Primary T cells from cord blood	blood
4	chr2:36903200-36905400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr2:36903400-36904600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr2:36903400-36905200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr2:36903600-36904800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr2:36903800-36904400	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr2:36903800-36905000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr2:36904000-36904400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr2:36904000-36904400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr2:36904000-36904600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr2:36904000-36904800	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr2:36904000-36905200	Enhancers	Thymus	Thymus
15	chr2:36904000-36905600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr2:36904000-36905600	Enhancers	Fetal Thymus	thymus
17	chr2:36904000-36905800	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr2:36904000-36905800	Enhancers	Primary hematopoietic stem cells	blood
19	chr2:36904200-36904600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr2:36904200-36904800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr2:36904200-36905000	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr2:36904200-36905600	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr2:36904200-36905800	Enhancers	HUVEC	blood vessel

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