Variant report

Variant	rs61565953
Chromosome Location	chr2:36968073-36968074
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10176373	1.00[EUR][1000 genomes]
rs10179564	1.00[EUR][1000 genomes]
rs1120741	1.00[EUR][1000 genomes]
rs1159961	1.00[EUR][1000 genomes]
rs12618264	1.00[EUR][1000 genomes]
rs2015020	1.00[EUR][1000 genomes]
rs2160330	1.00[EUR][1000 genomes]
rs4670156	1.00[EUR][1000 genomes]
rs4670586	1.00[EUR][1000 genomes]
rs59476177	1.00[EUR][1000 genomes]
rs61082903	1.00[EUR][1000 genomes]
rs6544023	1.00[EUR][1000 genomes]
rs6707637	1.00[EUR][1000 genomes]
rs6728533	1.00[EUR][1000 genomes]
rs6741718	1.00[EUR][1000 genomes]
rs6752584	1.00[EUR][1000 genomes]
rs7573730	1.00[EUR][1000 genomes]
rs7586076	1.00[EUR][1000 genomes]
rs7598592	1.00[EUR][1000 genomes]
rs7599651	1.00[EUR][1000 genomes]
rs7609206	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007757	chr2:36838387-37011384	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv535643	chr2:36838387-37011384	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36942600-36968800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:36958000-36968200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:36958000-36970800	Weak transcription	Ovary	ovary
4	chr2:36960200-36980400	Weak transcription	NHDF-Ad	bronchial
5	chr2:36961000-36971000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr2:36961800-36969600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr2:36965200-36979400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr2:36966800-36969600	Enhancers	Fetal Stomach	stomach
9	chr2:36967000-36968800	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr2:36967000-36969000	Enhancers	Primary hematopoietic stem cells	blood
11	chr2:36967000-36969000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr2:36967200-36968400	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr2:36967200-36968600	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr2:36967400-36968400	Weak transcription	Fetal Muscle Leg	muscle
15	chr2:36967400-36968800	Enhancers	Primary T cells from cord blood	blood
16	chr2:36967600-36968400	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr2:36967600-36968600	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr2:36967800-36968800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr2:36968000-36968400	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr2:36968000-36968800	Weak transcription	Fetal Lung	lung

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