Variant report

Variant	rs12618264
Chromosome Location	chr2:36924963-36924964
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FEZ2-2	chr2:36924810-36925173	expReg_chr2_2321_-

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10176373	1.00[EUR][1000 genomes]
rs10179564	1.00[EUR][1000 genomes]
rs1120741	1.00[EUR][1000 genomes]
rs1159961	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1468808	0.81[AMR][1000 genomes]
rs2015020	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2110877	0.82[AMR][1000 genomes]
rs2110878	0.82[AMR][1000 genomes]
rs2110880	0.91[AMR][1000 genomes]
rs2160330	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2192890	0.91[AMR][1000 genomes]
rs4670156	0.86[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4670583	0.91[AMR][1000 genomes]
rs4670586	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59476177	1.00[EUR][1000 genomes]
rs61082903	1.00[EUR][1000 genomes]
rs61565953	1.00[EUR][1000 genomes]
rs6544023	1.00[EUR][1000 genomes]
rs6707637	1.00[EUR][1000 genomes]
rs6710381	0.91[AMR][1000 genomes]
rs6728533	1.00[EUR][1000 genomes]
rs6741718	1.00[EUR][1000 genomes]
rs6745098	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6752584	0.84[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7573730	1.00[EUR][1000 genomes]
rs7586076	1.00[EUR][1000 genomes]
rs7598592	1.00[EUR][1000 genomes]
rs7599651	1.00[EUR][1000 genomes]
rs7609206	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010985	chr2:36707157-36942066	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv535642	chr2:36707157-36942066	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv1007757	chr2:36838387-37011384	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv535643	chr2:36838387-37011384	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv873878	chr2:36908661-36942266	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv962062	chr2:36920237-36925000	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	esv1794298	chr2:36924040-36929933	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36922400-36925200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr2:36922800-36925000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr2:36922800-36925200	Enhancers	Fetal Lung	lung
4	chr2:36922800-36925200	Enhancers	NH-A	brain
5	chr2:36922800-36925400	Flanking Active TSS	Osteobl	bone
6	chr2:36922800-36925800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr2:36922800-36925800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr2:36923200-36925000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr2:36923200-36925600	Active TSS	NHDF-Ad	bronchial
10	chr2:36923400-36925200	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr2:36923400-36925400	Flanking Active TSS	HUVEC	blood vessel
12	chr2:36923400-36925600	Active TSS	Right Atrium	heart
13	chr2:36923400-36925800	Active TSS	Ovary	ovary
14	chr2:36923800-36925400	Active TSS	Breast Myoepithelial Primary Cells	Breast
15	chr2:36924000-36925000	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr2:36924000-36925000	Active TSS	Stomach Smooth Muscle	stomach
17	chr2:36924000-36925200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr2:36924000-36925400	Active TSS	Adipose Nuclei	Adipose
19	chr2:36924400-36925000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr2:36924400-36925000	Enhancers	HUES64 Cell Line	embryonic stem cell
21	chr2:36924400-36925200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
22	chr2:36924400-36925200	Flanking Active TSS	HMEC	breast
23	chr2:36924400-36925200	Flanking Active TSS	NHEK	skin
24	chr2:36924400-36925600	Active TSS	Skeletal Muscle Male	skeletal muscle
25	chr2:36924400-36925800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr2:36924400-36925800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr2:36924600-36925000	Flanking Active TSS	A549	lung
28	chr2:36924600-36925000	Enhancers	HepG2	liver
29	chr2:36924600-36925200	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr2:36924600-36925200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr2:36924600-36925200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr2:36924600-36925200	Active TSS	Left Ventricle	heart
33	chr2:36924600-36925200	Active TSS	Psoas Muscle	Psoas
34	chr2:36924600-36925200	Active TSS	Skeletal Muscle Female	skeletal muscle
35	chr2:36924600-36925200	Flanking Active TSS	Hela-S3	cervix
36	chr2:36924600-36925200	Flanking Active TSS	HSMM	muscle
37	chr2:36924600-36925200	Enhancers	HSMMtube	muscle
38	chr2:36924600-36925600	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr2:36924600-36927200	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr2:36924600-36927200	Enhancers	Primary neutrophils fromperipheralblood	blood
41	chr2:36924600-36927200	Enhancers	Monocytes-CD14+_RO01746	blood
42	chr2:36924800-36925200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr2:36924800-36928400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr2:36924800-36928800	Weak transcription	NHLF	lung

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