Variant report

Variant	rs6752584
Chromosome Location	chr2:36919390-36919391
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr2:36919238-36919596	HepG2	liver:	n/a	chr2:36919410-36919425
2	MAFK	chr2:36919248-36919589	IMR90	lung:	n/a	chr2:36919410-36919425
3	MAFF	chr2:36919246-36919600	HepG2	liver:	n/a	chr2:36919409-36919427
4	MAFK	chr2:36919285-36919556	K562	blood:	n/a	chr2:36919410-36919425
5	MAFK	chr2:36919243-36919582	HepG2	liver:	n/a	chr2:36919410-36919425
6	MAFF	chr2:36919261-36919570	K562	blood:	n/a	chr2:36919409-36919427

Variant related genes	Relation type
VIT	TF binding region

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10176373	1.00[EUR][1000 genomes]
rs10179564	1.00[EUR][1000 genomes]
rs1120741	1.00[EUR][1000 genomes]
rs1159961	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12618264	0.84[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1468808	0.81[AMR][1000 genomes]
rs2015020	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2110877	0.82[AMR][1000 genomes]
rs2110878	0.82[AMR][1000 genomes]
rs2110880	0.91[AMR][1000 genomes]
rs2160330	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2192890	0.91[AMR][1000 genomes]
rs4670156	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4670583	0.91[AMR][1000 genomes]
rs4670586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59476177	1.00[EUR][1000 genomes]
rs61082903	1.00[EUR][1000 genomes]
rs61565953	1.00[EUR][1000 genomes]
rs6544023	1.00[EUR][1000 genomes]
rs6707637	1.00[EUR][1000 genomes]
rs6710381	0.91[AMR][1000 genomes]
rs6728533	1.00[EUR][1000 genomes]
rs6741718	1.00[EUR][1000 genomes]
rs6745098	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7573730	1.00[EUR][1000 genomes]
rs7586076	1.00[EUR][1000 genomes]
rs7598592	1.00[EUR][1000 genomes]
rs7599651	1.00[EUR][1000 genomes]
rs7609206	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010985	chr2:36707157-36942066	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv535642	chr2:36707157-36942066	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv1007757	chr2:36838387-37011384	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv535643	chr2:36838387-37011384	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
6	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
7	nsv873878	chr2:36908661-36942266	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36918800-36920400	Enhancers	Fetal Lung	lung
2	chr2:36918800-36920800	Enhancers	Ovary	ovary
3	chr2:36918800-36922800	Weak transcription	Gastric	stomach

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