Variant report

Variant	rs4671064
Chromosome Location	chr2:63760158-63760159
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs10168545	0.84[EUR][1000 genomes]
rs10176522	0.82[EUR][1000 genomes]
rs1023820	0.83[EUR][1000 genomes]
rs10469944	0.81[EUR][1000 genomes]
rs10469945	0.81[EUR][1000 genomes]
rs10865337	0.82[EUR][1000 genomes]
rs10865338	0.84[EUR][1000 genomes]
rs10865339	0.81[EUR][1000 genomes]
rs11125977	0.81[EUR][1000 genomes]
rs11125978	0.82[EUR][1000 genomes]
rs11898615	0.84[EUR][1000 genomes]
rs12713496	0.83[EUR][1000 genomes]
rs12990914	0.83[EUR][1000 genomes]
rs1446564	0.84[EUR][1000 genomes]
rs1446565	0.84[EUR][1000 genomes]
rs1446569	0.81[EUR][1000 genomes]
rs1867847	0.82[EUR][1000 genomes]
rs1867849	0.84[EUR][1000 genomes]
rs2028883	0.82[EUR][1000 genomes]
rs2028887	0.81[EUR][1000 genomes]
rs2084200	0.81[EUR][1000 genomes]
rs2121350	0.82[EUR][1000 genomes]
rs2121351	0.81[EUR][1000 genomes]
rs2166494	0.81[EUR][1000 genomes]
rs2166497	0.83[EUR][1000 genomes]
rs2422011	0.81[EUR][1000 genomes]
rs262470	0.81[EUR][1000 genomes]
rs262473	0.81[EUR][1000 genomes]
rs262489	0.81[EUR][1000 genomes]
rs262493	0.81[EUR][1000 genomes]
rs262495	0.80[EUR][1000 genomes]
rs2901614	0.80[EUR][1000 genomes]
rs4671065	0.83[EUR][1000 genomes]
rs4671068	0.82[EUR][1000 genomes]
rs4671512	0.81[EUR][1000 genomes]
rs4671514	0.86[EUR][1000 genomes]
rs4671515	0.83[EUR][1000 genomes]
rs4671516	0.82[EUR][1000 genomes]
rs4671519	0.83[EUR][1000 genomes]
rs6546007	0.84[EUR][1000 genomes]
rs6546009	0.84[EUR][1000 genomes]
rs6546011	0.88[EUR][1000 genomes]
rs6546016	0.82[EUR][1000 genomes]
rs6546017	0.82[EUR][1000 genomes]
rs6546018	0.81[EUR][1000 genomes]
rs6546019	0.81[EUR][1000 genomes]
rs6706123	0.81[EUR][1000 genomes]
rs6708804	0.81[EUR][1000 genomes]
rs6717031	0.81[EUR][1000 genomes]
rs6724160	0.80[EUR][1000 genomes]
rs6732791	0.83[EUR][1000 genomes]
rs6734648	0.83[EUR][1000 genomes]
rs6736029	0.83[EUR][1000 genomes]
rs6738190	0.83[EUR][1000 genomes]
rs6754730	0.85[EUR][1000 genomes]
rs68183503	0.85[EUR][1000 genomes]
rs7563623	0.84[EUR][1000 genomes]
rs7570031	0.81[EUR][1000 genomes]
rs7571017	0.82[EUR][1000 genomes]
rs7571325	0.81[EUR][1000 genomes]
rs7576316	0.84[EUR][1000 genomes]
rs7577952	0.83[EUR][1000 genomes]
rs7581630	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7584404	0.83[EUR][1000 genomes]
rs7607257	0.81[EUR][1000 genomes]
rs7608513	0.86[EUR][1000 genomes]
rs959195	0.83[EUR][1000 genomes]
rs964903	0.84[EUR][1000 genomes]
rs9789351	0.84[EUR][1000 genomes]
rs989527	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1800788	chr2:63473443-63900292	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv960963	chr2:63741610-63765229	ZNF genes & repeats Enhancers Weak transcription Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs4671064	WDPCP	cis	Adipose Subcutaneous	GTEx
rs4671064	MDH1	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63758400-63761600	Weak transcription	Gastric	stomach

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