Variant report

Variant	rs2028887
Chromosome Location	chr2:63716223-63716224
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr2:63716120-63716270	NHDF-neo	bronchial:	n/a	n/a
2	CTCF	chr2:63716120-63716270	BJ	skin:	n/a	n/a
3	CTCF	chr2:63716100-63716250	GM12869	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:63279540..63282194-chr2:63714511..63717161,2	MCF-7	breast:

Variant related genes	Relation type
WDPCP	TF binding region

Extended variants
information (count: 227 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:225)

rs_ID	r²[population]
rs10168545	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.97[TSI][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10170988	0.92[EUR][1000 genomes]
rs10171223	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10176522	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1023820	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1031221	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap]
rs10469944	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10469945	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1082363	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10865337	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10865338	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10865339	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11125957	0.82[CEU][hapmap]
rs11125967	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs11125977	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[GIH][hapmap];0.87[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11125978	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs112194	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11675647	0.82[CEU][hapmap]
rs11691718	0.82[CEU][hapmap]
rs11693047	0.80[EUR][1000 genomes]
rs11693909	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11883730	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs11894445	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs11898615	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12105140	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1255	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12618974	0.82[CEU][hapmap]
rs12713478	0.82[CEU][hapmap]
rs12713494	0.89[CEU][hapmap];1.00[CHB][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.92[EUR][1000 genomes]
rs12713496	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12990914	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12994711	0.82[CEU][hapmap]
rs13011799	0.82[CEU][hapmap]
rs1348803	0.82[EUR][1000 genomes]
rs1348806	0.83[EUR][1000 genomes]
rs1356390	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.92[EUR][1000 genomes]
rs1374308	0.83[EUR][1000 genomes]
rs1400687	0.82[CEU][hapmap]
rs1400688	0.81[CEU][hapmap]
rs1446563	0.83[EUR][1000 genomes]
rs1446564	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1446565	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1446569	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1517404	0.82[CEU][hapmap]
rs1550860	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs166384	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs166385	0.82[EUR][1000 genomes]
rs171901	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs171902	0.82[EUR][1000 genomes]
rs174485	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1829261	1.00[CHB][hapmap]
rs185499	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1867847	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.94[EUR][1000 genomes]
rs1867849	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes]
rs187801	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs190519	0.87[EUR][1000 genomes]
rs1922421	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs196123	0.89[ASN][1000 genomes]
rs196124	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs196125	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2028883	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2084200	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2090479	0.82[CEU][hapmap]
rs2121350	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2121351	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2121353	0.83[EUR][1000 genomes]
rs2166494	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2166497	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2176415	0.87[EUR][1000 genomes]
rs2176416	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs2176417	0.89[CEU][hapmap]
rs2292793	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs2292794	0.82[CEU][hapmap]
rs2292795	0.82[CEU][hapmap]
rs2305157	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2421886	0.82[CEU][hapmap]
rs2421887	0.82[CEU][hapmap]
rs2421952	1.00[CEU][hapmap];0.89[GIH][hapmap];0.82[MEX][hapmap];0.97[TSI][hapmap]
rs2422007	0.88[CEU][hapmap];1.00[JPT][hapmap]
rs2422011	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2592386	0.83[EUR][1000 genomes]
rs2592388	0.82[EUR][1000 genomes]
rs2604613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2604614	0.82[EUR][1000 genomes]
rs2604617	0.82[EUR][1000 genomes]
rs262470	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs262471	0.88[EUR][1000 genomes]
rs262472	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs262473	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs262474	0.89[EUR][1000 genomes]
rs262475	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs262476	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs262477	0.94[CEU][hapmap];1.00[CHB][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs262478	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs262479	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs262480	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs262481	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs262482	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs262483	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs262484	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs262485	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs262486	0.83[EUR][1000 genomes]
rs262487	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs262488	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs262489	0.87[EUR][1000 genomes]
rs262490	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs262491	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs262492	0.89[ASN][1000 genomes]
rs262493	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs262494	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs262495	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs262501	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs262502	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs262503	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs262504	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs262505	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs262506	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs262507	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs262508	0.83[EUR][1000 genomes]
rs262509	0.82[EUR][1000 genomes]
rs262510	0.83[EUR][1000 genomes]
rs262514	0.83[EUR][1000 genomes]
rs262515	0.81[EUR][1000 genomes]
rs262516	0.83[EUR][1000 genomes]
rs262518	0.83[EUR][1000 genomes]
rs262519	0.83[EUR][1000 genomes]
rs262520	0.83[EUR][1000 genomes]
rs262521	0.83[EUR][1000 genomes]
rs262523	0.82[EUR][1000 genomes]
rs262524	0.83[EUR][1000 genomes]
rs262525	0.82[EUR][1000 genomes]
rs262526	0.83[EUR][1000 genomes]
rs262527	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs262528	0.82[EUR][1000 genomes]
rs262529	0.82[EUR][1000 genomes]
rs262530	0.82[EUR][1000 genomes]
rs262533	0.82[EUR][1000 genomes]
rs262536	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs262537	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs262538	0.82[EUR][1000 genomes]
rs2901580	0.81[CEU][hapmap]
rs2901614	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3980466	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4255949	0.86[EUR][1000 genomes]
rs4428008	0.82[CEU][hapmap]
rs4560098	0.82[CEU][hapmap]
rs4611627	0.82[CEU][hapmap]
rs4671064	0.81[EUR][1000 genomes]
rs4671065	0.94[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4671066	0.83[EUR][1000 genomes]
rs4671067	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4671068	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4671069	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4671476	0.82[CEU][hapmap]
rs4671488	0.89[CEU][hapmap]
rs4671494	0.89[CEU][hapmap]
rs4671503	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs4671505	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs4671508	0.92[EUR][1000 genomes]
rs4671509	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4671512	0.94[EUR][1000 genomes]
rs4671514	0.92[EUR][1000 genomes]
rs4671515	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4671516	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4671517	0.85[EUR][1000 genomes]
rs4671519	0.91[EUR][1000 genomes]
rs6545986	0.82[CEU][hapmap]
rs6546001	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs6546002	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs6546004	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.89[EUR][1000 genomes]
rs6546005	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs6546007	1.00[CEU][hapmap];0.89[GIH][hapmap];0.95[TSI][hapmap];0.96[EUR][1000 genomes]
rs6546009	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs6546011	0.87[EUR][1000 genomes]
rs6546016	0.89[EUR][1000 genomes]
rs6546017	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6546018	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6546019	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6705776	0.82[CEU][hapmap]
rs6706123	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6706180	0.82[CEU][hapmap]
rs6708804	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6708847	0.82[CEU][hapmap]
rs6709115	0.82[CEU][hapmap]
rs6713500	0.82[CEU][hapmap]
rs6717031	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6717060	0.89[CEU][hapmap]
rs6724160	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6732791	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6734468	0.82[CEU][hapmap]
rs6734648	0.95[EUR][1000 genomes]
rs6736029	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6736411	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6738190	0.88[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6741817	0.82[CEU][hapmap]
rs6744720	0.82[CEU][hapmap]
rs6748030	0.82[CEU][hapmap]
rs6754730	0.89[EUR][1000 genomes]
rs68183503	0.92[EUR][1000 genomes]
rs7558796	0.82[CEU][hapmap]
rs7563623	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7570031	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7571017	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7571325	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7571697	0.82[CEU][hapmap]
rs7576316	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7577952	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7580520	0.82[CEU][hapmap];1.00[JPT][hapmap]
rs7581630	0.85[EUR][1000 genomes]
rs7584404	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7591562	0.82[CEU][hapmap]
rs7606045	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7607257	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7608470	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7608513	0.94[EUR][1000 genomes]
rs908621	0.82[CEU][hapmap]
rs908622	0.82[CEU][hapmap]
rs9309355	1.00[CHB][hapmap]
rs932171	0.82[CEU][hapmap]
rs932172	0.82[CEU][hapmap]
rs959195	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs964880	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs964903	0.94[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9789351	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs989527	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417336	chr2:62957866-63749654	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv1800788	chr2:63473443-63900292	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2028887	WDPCP	cis	Adipose Subcutaneous	GTEx
rs2028887	MDH1	cis	cerebellum	SCAN
rs2028887	MDH1	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63666600-63726800	Weak transcription	Gastric	stomach
2	chr2:63681600-63717800	Weak transcription	Aorta	Aorta
3	chr2:63682400-63717600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:63688600-63727800	Weak transcription	Primary B cells from cord blood	blood
5	chr2:63688800-63723000	Weak transcription	Liver	Liver
6	chr2:63690600-63733000	Weak transcription	Dnd41	blood
7	chr2:63691000-63724400	Weak transcription	Primary B cells from peripheral blood	blood
8	chr2:63691400-63728000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr2:63691600-63719800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr2:63698600-63726800	Weak transcription	Left Ventricle	heart
11	chr2:63698600-63733600	Weak transcription	Primary T cells from cord blood	blood
12	chr2:63702800-63719800	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr2:63705000-63723600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr2:63705200-63721400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr2:63705200-63721400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr2:63705200-63724800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr2:63708400-63720400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr2:63709400-63724200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr2:63712200-63717800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr2:63712200-63727600	Weak transcription	Fetal Heart	heart
21	chr2:63712400-63718400	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr2:63712400-63720200	Weak transcription	Adipose Nuclei	Adipose
23	chr2:63712400-63722200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr2:63714200-63719400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr2:63714200-63725000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr2:63714400-63720200	Weak transcription	Thymus	Thymus
27	chr2:63715400-63722200	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr2:63715600-63727000	Weak transcription	Pancreas	Pancrea
29	chr2:63716200-63718400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links