Variant report

Variant	rs10171223
Chromosome Location	chr2:63687700-63687701
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 263 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:260)

rs_ID	r²[population]
rs10168545	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10170988	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10173637	0.82[CEU][hapmap]
rs10176522	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10207356	0.82[CEU][hapmap]
rs10209822	0.82[ASW][hapmap];0.80[GIH][hapmap];0.89[MEX][hapmap]
rs1023820	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1031221	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.89[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap]
rs10469944	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10469945	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1082363	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10865337	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10865338	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10865339	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11125957	0.82[ASW][hapmap];0.82[CEU][hapmap];0.80[GIH][hapmap]
rs11125967	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs11125977	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[MEX][hapmap];0.93[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11125978	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs112194	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11675647	0.82[CEU][hapmap]
rs11684108	0.82[CEU][hapmap]
rs11691718	0.82[CEU][hapmap]
rs11693047	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11693909	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11883730	0.82[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];0.80[GIH][hapmap];0.89[MEX][hapmap]
rs11894445	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs11898615	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12105140	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1255	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12618974	0.82[CEU][hapmap]
rs12713476	0.82[CEU][hapmap]
rs12713477	0.82[CEU][hapmap]
rs12713478	0.82[CEU][hapmap]
rs12713494	0.82[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.81[MKK][hapmap];0.92[TSI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12713496	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12990914	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12994711	0.82[CEU][hapmap]
rs13000175	1.00[YRI][hapmap]
rs13011799	0.82[CEU][hapmap]
rs1348803	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1348806	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1356390	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1374308	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1400686	0.82[ASW][hapmap];0.80[GIH][hapmap];0.89[MEX][hapmap]
rs1400687	0.82[CEU][hapmap];0.80[GIH][hapmap];0.89[MEX][hapmap]
rs1400688	0.81[CEU][hapmap]
rs1446563	0.80[EUR][1000 genomes]
rs1446564	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1446565	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1446569	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1517404	0.82[CEU][hapmap]
rs1517405	0.82[ASW][hapmap];0.82[CEU][hapmap];0.80[GIH][hapmap];0.89[MEX][hapmap]
rs1550860	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1607203	0.82[CEU][hapmap]
rs1607205	0.82[ASW][hapmap];0.82[CEU][hapmap];0.80[GIH][hapmap]
rs166384	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs171901	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs171902	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs174485	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1829261	1.00[CHB][hapmap]
rs185499	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1867847	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.90[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1867849	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs187801	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs190519	0.84[EUR][1000 genomes]
rs1922421	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs196124	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs196125	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2028883	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2028887	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2030188	0.82[CEU][hapmap]
rs2084200	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2090479	0.82[ASW][hapmap];0.82[CEU][hapmap]
rs2121350	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2121351	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2121353	0.80[EUR][1000 genomes]
rs2166494	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2166497	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2176415	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2176416	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs2176417	0.89[CEU][hapmap]
rs2176418	0.80[GIH][hapmap]
rs2263636	0.82[CEU][hapmap]
rs2292793	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2292794	0.82[ASW][hapmap];0.82[CEU][hapmap];0.84[GIH][hapmap];0.89[MEX][hapmap]
rs2292795	0.82[ASW][hapmap];0.82[CEU][hapmap];0.84[GIH][hapmap];0.89[MEX][hapmap]
rs2305157	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2421881	0.82[CEU][hapmap]
rs2421886	0.82[CEU][hapmap]
rs2421887	0.82[CEU][hapmap]
rs2421952	1.00[CEU][hapmap];0.95[TSI][hapmap]
rs2422007	0.88[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2422011	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2592386	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2592388	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2604613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2604614	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2604617	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs262470	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs262471	0.86[EUR][1000 genomes]
rs262472	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs262473	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs262474	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs262475	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs262476	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs262477	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.95[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs262478	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs262479	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs262480	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs262481	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs262482	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs262483	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs262484	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs262485	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs262486	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs262487	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs262488	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs262489	0.86[EUR][1000 genomes]
rs262490	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs262491	1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.89[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs262493	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs262495	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs262501	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs262502	0.86[EUR][1000 genomes]
rs262503	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs262504	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs262505	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs262506	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs262507	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs262508	0.80[EUR][1000 genomes]
rs262509	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs262510	0.80[EUR][1000 genomes]
rs262514	0.80[EUR][1000 genomes]
rs262515	0.83[AMR][1000 genomes]
rs262516	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs262518	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs262519	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs262520	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs262521	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs262523	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs262524	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs262525	0.82[AMR][1000 genomes]
rs262526	0.80[EUR][1000 genomes]
rs262527	0.80[EUR][1000 genomes]
rs262528	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs262529	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs262530	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs262533	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs262536	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs262538	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2677436	0.82[CEU][hapmap]
rs2677438	0.82[CEU][hapmap]
rs2677439	0.82[ASW][hapmap];0.82[CEU][hapmap];0.80[GIH][hapmap]
rs2699388	0.82[CEU][hapmap]
rs2699389	0.82[CEU][hapmap]
rs2699390	0.82[CEU][hapmap]
rs2699391	0.82[CEU][hapmap]
rs2901580	0.81[CEU][hapmap]
rs2901614	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2945032	0.82[CEU][hapmap]
rs2951192	0.82[CEU][hapmap]
rs3980466	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4255949	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4416201	0.82[CEU][hapmap]
rs4428008	0.82[CEU][hapmap]
rs4560098	0.82[CEU][hapmap]
rs4611627	0.82[CEU][hapmap]
rs4671065	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4671066	0.81[EUR][1000 genomes]
rs4671067	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4671068	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4671069	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4671470	0.82[CEU][hapmap]
rs4671471	0.82[CEU][hapmap]
rs4671472	0.82[CEU][hapmap]
rs4671473	0.82[CEU][hapmap]
rs4671474	0.82[ASW][hapmap];0.81[CEU][hapmap];0.80[GIH][hapmap];0.89[MEX][hapmap]
rs4671476	0.82[CEU][hapmap]
rs4671479	0.82[ASW][hapmap];0.80[GIH][hapmap];0.89[MEX][hapmap]
rs4671488	0.89[CEU][hapmap]
rs4671494	0.89[CEU][hapmap]
rs4671503	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4671505	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4671508	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4671509	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4671512	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4671514	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4671515	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4671516	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4671517	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4671519	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6545984	0.82[ASW][hapmap]
rs6545986	0.82[ASW][hapmap];0.82[CEU][hapmap];0.80[GIH][hapmap];0.89[MEX][hapmap]
rs6545997	0.82[ASW][hapmap];0.80[GIH][hapmap];0.89[MEX][hapmap]
rs6546001	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs6546002	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs6546004	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6546005	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6546007	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6546009	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6546011	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6546016	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6546017	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6546018	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6546019	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6705776	0.82[CEU][hapmap]
rs6706123	0.91[EUR][1000 genomes]
rs6706180	0.82[ASW][hapmap];0.82[CEU][hapmap];0.83[GIH][hapmap]
rs6708804	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6708847	0.82[CEU][hapmap]
rs6709115	0.82[CEU][hapmap]
rs6713500	0.82[CEU][hapmap]
rs6717031	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6717060	0.89[CEU][hapmap]
rs6724044	0.82[ASW][hapmap];0.81[CEU][hapmap];0.80[GIH][hapmap];0.89[MEX][hapmap]
rs6724160	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6725694	0.82[ASW][hapmap];0.82[CEU][hapmap];0.80[GIH][hapmap];0.89[MEX][hapmap]
rs6732791	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6734468	0.82[CEU][hapmap]
rs6734648	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6736029	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6736411	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6738190	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6741817	0.82[CEU][hapmap]
rs6744720	0.82[CEU][hapmap]
rs6748030	0.82[CEU][hapmap]
rs6754730	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs68183503	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7558796	0.82[CEU][hapmap]
rs7558922	0.82[ASW][hapmap];0.80[GIH][hapmap];0.89[MEX][hapmap]
rs7559137	0.82[ASW][hapmap];0.80[GIH][hapmap]
rs7561802	0.82[ASW][hapmap];0.80[GIH][hapmap];0.89[MEX][hapmap]
rs7563623	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7570031	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.86[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7571017	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7571325	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7571697	0.82[CEU][hapmap]
rs7576316	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7577952	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7581630	0.84[EUR][1000 genomes]
rs7584404	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7585664	0.82[ASW][hapmap];0.80[GIH][hapmap]
rs7591562	0.82[ASW][hapmap];0.82[CEU][hapmap];0.80[GIH][hapmap];0.89[MEX][hapmap]
rs7596446	0.82[ASW][hapmap];0.81[CEU][hapmap]
rs7599736	0.82[ASW][hapmap];0.89[MEX][hapmap]
rs7606045	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs7607257	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7608470	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7608513	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs908621	0.82[CEU][hapmap]
rs908622	0.82[CEU][hapmap]
rs9309355	1.00[CHB][hapmap]
rs932171	0.82[CEU][hapmap]
rs932172	0.82[CEU][hapmap]
rs959195	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs964880	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs964903	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs970278	0.82[CEU][hapmap]
rs9789351	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs989527	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417336	chr2:62957866-63749654	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv1800788	chr2:63473443-63900292	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv874235	chr2:63622470-63709708	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10171223	MDH1	cis	cerebellum	SCAN
rs10171223	MDH1	cis	Adipose Subcutaneous	GTEx
rs10171223	WDPCP	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63631800-63688000	Weak transcription	Right Ventricle	heart
2	chr2:63662000-63698000	Weak transcription	Ovary	ovary
3	chr2:63662800-63688000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr2:63666400-63688000	Weak transcription	Primary B cells from cord blood	blood
5	chr2:63666600-63726800	Weak transcription	Gastric	stomach
6	chr2:63673600-63697800	Weak transcription	Left Ventricle	heart
7	chr2:63674400-63693200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr2:63675800-63712000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr2:63680400-63698400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr2:63680600-63705800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr2:63681400-63688800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
12	chr2:63681600-63717800	Weak transcription	Aorta	Aorta
13	chr2:63682200-63687800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr2:63682200-63688200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr2:63682400-63688600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr2:63682400-63717600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr2:63683000-63687800	Weak transcription	Duodenum Mucosa	Duodenum
18	chr2:63683400-63712800	Weak transcription	Fetal Thymus	thymus
19	chr2:63683600-63688000	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr2:63684600-63698800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr2:63684800-63695400	Weak transcription	Brain Substantia Nigra	brain
22	chr2:63685600-63688800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr2:63685800-63692800	Weak transcription	Fetal Heart	heart
24	chr2:63686000-63688400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr2:63686000-63704600	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr2:63686200-63698400	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr2:63686400-63688200	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr2:63686600-63693000	Weak transcription	NH-A	brain
29	chr2:63686600-63706800	Weak transcription	Colon Smooth Muscle	Colon
30	chr2:63686800-63692000	Strong transcription	Adipose Nuclei	Adipose
31	chr2:63687000-63688000	Weak transcription	Fetal Stomach	stomach
32	chr2:63687000-63693200	Weak transcription	Brain Angular Gyrus	brain
33	chr2:63687400-63688000	Weak transcription	Liver	Liver
34	chr2:63687400-63688200	Weak transcription	Fetal Lung	lung
35	chr2:63687400-63688400	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr2:63687400-63692200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr2:63687400-63701000	Weak transcription	Brain Cingulate Gyrus	brain
38	chr2:63687600-63689600	Weak transcription	Fetal Intestine Large	intestine
39	chr2:63687600-63713200	Weak transcription	Fetal Kidney	kidney

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