Variant report

Variant	rs9309355
Chromosome Location	chr2:63831734-63831735
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs10153822	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10167957	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10168545	1.00[CHB][hapmap]
rs10171223	1.00[CHB][hapmap]
rs10175007	0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10175463	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10200556	1.00[AMR][1000 genomes]
rs10202649	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1023820	1.00[CHB][hapmap]
rs1031221	1.00[CHB][hapmap]
rs10469944	1.00[CHB][hapmap]
rs10469945	1.00[CHB][hapmap]
rs10865338	1.00[CHB][hapmap]
rs11125977	1.00[CHB][hapmap]
rs11693909	1.00[CHB][hapmap]
rs11885358	0.96[YRI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11893294	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11896034	1.00[EUR][1000 genomes]
rs11900991	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12105140	1.00[CHB][hapmap]
rs12473342	1.00[CHB][hapmap]
rs1255	1.00[CHB][hapmap]
rs12713494	1.00[CHB][hapmap]
rs12713496	1.00[CHB][hapmap]
rs13390106	0.96[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13408481	1.00[EUR][1000 genomes]
rs13411288	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13415780	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13419067	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13421646	0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13424973	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1356390	1.00[CHB][hapmap]
rs1446564	1.00[CHB][hapmap]
rs1446565	1.00[CHB][hapmap]
rs1446569	1.00[CHB][hapmap]
rs1550860	1.00[CHB][hapmap]
rs17028100	1.00[CHB][hapmap]
rs171901	1.00[CHB][hapmap]
rs17619598	1.00[CHB][hapmap]
rs17619855	1.00[CHB][hapmap]
rs1867847	1.00[CHB][hapmap]
rs1867849	1.00[CHB][hapmap]
rs196124	1.00[CHB][hapmap]
rs2028887	1.00[CHB][hapmap]
rs2121350	1.00[CHB][hapmap]
rs2166494	1.00[CHB][hapmap]
rs2292793	1.00[CHB][hapmap]
rs2305157	1.00[CHB][hapmap]
rs2422011	1.00[CHB][hapmap]
rs2604613	1.00[CHB][hapmap]
rs262470	1.00[CHB][hapmap]
rs262472	1.00[CHB][hapmap]
rs262473	1.00[CHB][hapmap]
rs262477	1.00[CHB][hapmap]
rs262478	1.00[CHB][hapmap]
rs262479	1.00[CHB][hapmap]
rs262490	1.00[CHB][hapmap]
rs262491	1.00[CHB][hapmap]
rs262527	1.00[CHB][hapmap]
rs262536	1.00[CHB][hapmap]
rs262537	1.00[CHB][hapmap]
rs35012898	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4671065	1.00[CHB][hapmap]
rs4671503	1.00[CHB][hapmap]
rs4671505	1.00[CHB][hapmap]
rs4671509	1.00[CHB][hapmap]
rs4671515	1.00[CHB][hapmap]
rs61361027	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6546004	1.00[CHB][hapmap]
rs6546005	1.00[CHB][hapmap]
rs6546018	1.00[CHB][hapmap]
rs6546019	1.00[CHB][hapmap]
rs6708804	1.00[CHB][hapmap]
rs6717031	1.00[CHB][hapmap]
rs6730863	1.00[CHB][hapmap]
rs6736411	1.00[CHB][hapmap]
rs6738190	1.00[CHB][hapmap]
rs6748271	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6753773	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73934731	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73937816	1.00[EUR][1000 genomes]
rs73937817	1.00[EUR][1000 genomes]
rs7570031	1.00[CHB][hapmap]
rs7576316	1.00[CHB][hapmap]
rs7584404	1.00[CHB][hapmap]
rs7596703	0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7606045	1.00[CHB][hapmap]
rs7607974	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7608470	1.00[CHB][hapmap]
rs959195	1.00[CHB][hapmap]
rs964880	1.00[CHB][hapmap]
rs964903	1.00[CHB][hapmap]
rs9789351	1.00[CHB][hapmap]
rs989527	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1800788	chr2:63473443-63900292	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1792289	chr2:63812148-63900292	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63817000-63831800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:63817200-63834400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:63818000-63834800	Strong transcription	Fetal Thymus	thymus
4	chr2:63818000-63835400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:63818400-63831800	Weak transcription	Colonic Mucosa	Colon
6	chr2:63818400-63831800	Weak transcription	Small Intestine	intestine
7	chr2:63818600-63834800	Strong transcription	Primary T cells from cord blood	blood
8	chr2:63818600-63835800	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr2:63818800-63831800	Weak transcription	Fetal Brain Male	brain
10	chr2:63818800-63832000	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr2:63819200-63835000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr2:63819400-63834800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr2:63819600-63834800	Strong transcription	Fetal Muscle Trunk	muscle
14	chr2:63820200-63834800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
15	chr2:63820200-63834800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr2:63820200-63835200	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr2:63820400-63834600	Strong transcription	Primary B cells from peripheral blood	blood
18	chr2:63820400-63834800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr2:63820400-63835000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr2:63820400-63835000	Strong transcription	Liver	Liver
21	chr2:63820600-63834200	Strong transcription	A549	lung
22	chr2:63820600-63834800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr2:63820600-63834800	Strong transcription	Placenta	Placenta
24	chr2:63820600-63835000	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr2:63820800-63834800	Strong transcription	Primary T helper cells fromperipheralblood	blood
26	chr2:63820800-63835600	Strong transcription	Dnd41	blood
27	chr2:63821200-63834400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr2:63821200-63834800	Strong transcription	Stomach Smooth Muscle	stomach
29	chr2:63821400-63834600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr2:63821400-63835000	Strong transcription	H1 Cell Line	embryonic stem cell
31	chr2:63821400-63835200	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr2:63821600-63834400	Strong transcription	Osteobl	bone
33	chr2:63821600-63834600	Strong transcription	GM12878-XiMat	blood
34	chr2:63821600-63843000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr2:63821800-63834600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr2:63822000-63836000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr2:63823600-63831800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr2:63823800-63834800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr2:63823800-63835800	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr2:63824400-63835400	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr2:63824800-63834600	Strong transcription	HepG2	liver
42	chr2:63825400-63834800	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr2:63825400-63835000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr2:63825800-63834600	Strong transcription	Cortex derived primary cultured neurospheres	brain
45	chr2:63825800-63834600	Strong transcription	HSMM	muscle
46	chr2:63825800-63834800	Strong transcription	Primary neutrophils fromperipheralblood	blood
47	chr2:63826200-63834600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr2:63826400-63836000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr2:63826600-63834600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr2:63826800-63834600	Strong transcription	NH-A	brain

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