Variant report

Variant	rs10200556
Chromosome Location	chr2:63850011-63850012
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10153822	1.00[AMR][1000 genomes]
rs10175007	1.00[AMR][1000 genomes]
rs10175463	0.89[AMR][1000 genomes]
rs10202649	1.00[AMR][1000 genomes]
rs11893294	1.00[AMR][1000 genomes]
rs11900991	1.00[AMR][1000 genomes]
rs13411288	1.00[AMR][1000 genomes]
rs13415780	1.00[AMR][1000 genomes]
rs13419067	1.00[AMR][1000 genomes]
rs13421646	1.00[AMR][1000 genomes]
rs13424973	0.87[AMR][1000 genomes]
rs35012898	1.00[AMR][1000 genomes]
rs6748271	1.00[AMR][1000 genomes]
rs6753773	1.00[AMR][1000 genomes]
rs73934731	0.87[AMR][1000 genomes]
rs7596703	1.00[AMR][1000 genomes]
rs7607974	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1800788	chr2:63473443-63900292	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	esv1792289	chr2:63812148-63900292	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv963239	chr2:63846496-63877130	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63844400-63865600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr2:63844800-63866200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr2:63848200-63855000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:63849600-63850200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:63849800-63850200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
6	chr2:63850000-63850200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links