Variant report

Variant	rs13424973
Chromosome Location	chr2:63790873-63790874
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10153822	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10167957	1.00[EUR][1000 genomes]
rs10175007	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10175463	1.00[EUR][1000 genomes]
rs10200556	0.87[AMR][1000 genomes]
rs10202649	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11885358	1.00[EUR][1000 genomes]
rs11893294	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11896034	1.00[EUR][1000 genomes]
rs11900991	0.87[AMR][1000 genomes]
rs13390106	1.00[EUR][1000 genomes]
rs13408481	1.00[EUR][1000 genomes]
rs13411288	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13415780	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13419067	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13421646	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35012898	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61361027	1.00[EUR][1000 genomes]
rs6748271	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6753773	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73934731	1.00[EUR][1000 genomes]
rs73934749	0.81[AFR][1000 genomes]
rs73937816	1.00[EUR][1000 genomes]
rs73937817	1.00[EUR][1000 genomes]
rs7596703	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7607974	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1800788	chr2:63473443-63900292	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63777400-63806800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr2:63778800-63794000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:63780200-63814800	Weak transcription	Psoas Muscle	Psoas
4	chr2:63780800-63791800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr2:63780800-63792200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr2:63781000-63793200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:63781000-63804000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr2:63782600-63793400	Weak transcription	Lung	lung
9	chr2:63783400-63798600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr2:63783600-63793800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr2:63787000-63793800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr2:63787600-63793200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr2:63789000-63793200	Weak transcription	Primary B cells from cord blood	blood
14	chr2:63789000-63808200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr2:63789000-63808200	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr2:63789200-63791000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr2:63789200-63793000	Weak transcription	HSMMtube	muscle
18	chr2:63789200-63793200	Weak transcription	Fetal Muscle Trunk	muscle
19	chr2:63789400-63793200	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr2:63789400-63793200	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr2:63789400-63794200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr2:63789400-63796600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr2:63789600-63793200	Weak transcription	Primary T cells from cord blood	blood
24	chr2:63789600-63795800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr2:63790000-63791400	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr2:63790000-63791600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr2:63790200-63791000	Strong transcription	Primary hematopoietic stem cells	blood
28	chr2:63790200-63791800	Strong transcription	Adipose Nuclei	Adipose
29	chr2:63790600-63791800	Strong transcription	Liver	Liver
30	chr2:63790600-63803000	Weak transcription	Fetal Heart	heart
31	chr2:63790800-63791600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr2:63790800-63791600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr2:63790800-63791800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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