Variant report

Variant	rs13390106
Chromosome Location	chr2:63726077-63726078
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:63710885..63713107-chr2:63724631..63726371,2	K562	blood:
2	chr2:63724967..63727086-chr2:63728677..63731026,2	K562	blood:

Variant related genes	Relation type
ENSG00000143951	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10153822	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10167957	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10175007	1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10175463	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10202649	0.96[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11885358	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11893294	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11896034	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13408481	1.00[EUR][1000 genomes]
rs13411288	0.96[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13415780	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13419067	0.96[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13421646	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13424973	1.00[EUR][1000 genomes]
rs35012898	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs61361027	1.00[EUR][1000 genomes]
rs6748271	1.00[EUR][1000 genomes]
rs6753773	1.00[EUR][1000 genomes]
rs73934731	1.00[EUR][1000 genomes]
rs73937816	1.00[EUR][1000 genomes]
rs73937817	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7596703	1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7607974	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9309355	0.96[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417336	chr2:62957866-63749654	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv1800788	chr2:63473443-63900292	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63666600-63726800	Weak transcription	Gastric	stomach
2	chr2:63688600-63727800	Weak transcription	Primary B cells from cord blood	blood
3	chr2:63690600-63733000	Weak transcription	Dnd41	blood
4	chr2:63691400-63728000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr2:63698600-63726800	Weak transcription	Left Ventricle	heart
6	chr2:63698600-63733600	Weak transcription	Primary T cells from cord blood	blood
7	chr2:63712200-63727600	Weak transcription	Fetal Heart	heart
8	chr2:63715600-63727000	Weak transcription	Pancreas	Pancrea
9	chr2:63716800-63733400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr2:63718000-63729600	Weak transcription	Aorta	Aorta
11	chr2:63721000-63726800	Weak transcription	Esophagus	oesophagus
12	chr2:63722200-63726200	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr2:63724600-63735200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr2:63725000-63726200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr2:63725200-63727000	Weak transcription	NHEK	skin
16	chr2:63725200-63727200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr2:63725800-63727200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr2:63726000-63726200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr2:63726000-63726200	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr2:63726000-63727200	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr2:63726000-63727400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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