Variant report

Variant	rs73937817
Chromosome Location	chr2:63713931-63713932
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr2:63713900-63714050	HCPEpiC	choroid plexus:	n/a	n/a
2	RAD21	chr2:63713911-63714597	SK-N-SH	brain:	n/a	chr2:63714283-63714302

Variant related genes	Relation type
WDPCP	TF binding region

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10153822	1.00[EUR][1000 genomes]
rs10167957	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10175007	1.00[EUR][1000 genomes]
rs10175463	1.00[EUR][1000 genomes]
rs10202649	1.00[EUR][1000 genomes]
rs11885358	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11893294	1.00[EUR][1000 genomes]
rs11896034	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13390106	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13408481	1.00[EUR][1000 genomes]
rs13411288	1.00[EUR][1000 genomes]
rs13415780	1.00[EUR][1000 genomes]
rs13419067	1.00[EUR][1000 genomes]
rs13421646	1.00[EUR][1000 genomes]
rs13424973	1.00[EUR][1000 genomes]
rs35012898	1.00[EUR][1000 genomes]
rs61361027	1.00[EUR][1000 genomes]
rs6748271	1.00[EUR][1000 genomes]
rs6753773	1.00[EUR][1000 genomes]
rs73934731	1.00[EUR][1000 genomes]
rs73937816	1.00[EUR][1000 genomes]
rs7596703	1.00[EUR][1000 genomes]
rs7607974	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417336	chr2:62957866-63749654	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv1800788	chr2:63473443-63900292	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63666600-63726800	Weak transcription	Gastric	stomach
2	chr2:63681600-63717800	Weak transcription	Aorta	Aorta
3	chr2:63682400-63717600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr2:63688600-63727800	Weak transcription	Primary B cells from cord blood	blood
5	chr2:63688800-63723000	Weak transcription	Liver	Liver
6	chr2:63690600-63733000	Weak transcription	Dnd41	blood
7	chr2:63691000-63724400	Weak transcription	Primary B cells from peripheral blood	blood
8	chr2:63691400-63728000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr2:63691600-63719800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr2:63698600-63726800	Weak transcription	Left Ventricle	heart
11	chr2:63698600-63733600	Weak transcription	Primary T cells from cord blood	blood
12	chr2:63702800-63719800	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr2:63704200-63714200	Weak transcription	GM12878-XiMat	blood
14	chr2:63705000-63723600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr2:63705200-63714400	Weak transcription	Psoas Muscle	Psoas
16	chr2:63705200-63721400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr2:63705200-63721400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr2:63705200-63724800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr2:63708400-63720400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr2:63709400-63724200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr2:63712200-63714000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr2:63712200-63715000	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr2:63712200-63717800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr2:63712200-63727600	Weak transcription	Fetal Heart	heart
25	chr2:63712400-63718400	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr2:63712400-63720200	Weak transcription	Adipose Nuclei	Adipose
27	chr2:63712400-63722200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr2:63713600-63714200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr2:63713800-63714000	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr2:63713800-63714200	Enhancers	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links