Variant report

Variant	rs35012898
Chromosome Location	chr2:63732375-63732376
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:63728282..63730215-chr2:63731772..63734074,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10153822	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10167957	0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10175007	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10175463	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10200556	1.00[AMR][1000 genomes]
rs10202649	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11885358	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11893294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11896034	1.00[EUR][1000 genomes]
rs11900991	1.00[AMR][1000 genomes]
rs13390106	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13408481	1.00[EUR][1000 genomes]
rs13411288	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13415780	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13419067	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13421646	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13424973	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61361027	1.00[EUR][1000 genomes]
rs6748271	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6753773	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73934731	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73937816	1.00[EUR][1000 genomes]
rs73937817	1.00[EUR][1000 genomes]
rs7596703	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7607974	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417336	chr2:62957866-63749654	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv1800788	chr2:63473443-63900292	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63690600-63733000	Weak transcription	Dnd41	blood
2	chr2:63698600-63733600	Weak transcription	Primary T cells from cord blood	blood
3	chr2:63716800-63733400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr2:63724600-63735200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr2:63727000-63733600	Weak transcription	Psoas Muscle	Psoas
6	chr2:63731400-63734200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr2:63731600-63732800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr2:63731600-63734000	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr2:63731600-63734200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr2:63731800-63732600	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr2:63731800-63733000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr2:63731800-63733800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr2:63732200-63732600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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