Variant report

Variant	rs11896034
Chromosome Location	chr2:63683602-63683603
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10153822	1.00[EUR][1000 genomes]
rs10167957	1.00[EUR][1000 genomes]
rs10175007	1.00[EUR][1000 genomes]
rs10175463	1.00[EUR][1000 genomes]
rs10202649	1.00[EUR][1000 genomes]
rs11885358	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11893294	1.00[EUR][1000 genomes]
rs13390106	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13408481	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13411288	1.00[EUR][1000 genomes]
rs13415780	1.00[EUR][1000 genomes]
rs13419067	1.00[EUR][1000 genomes]
rs13421646	1.00[EUR][1000 genomes]
rs13424973	1.00[EUR][1000 genomes]
rs35012898	1.00[EUR][1000 genomes]
rs61361027	1.00[EUR][1000 genomes]
rs6748271	1.00[EUR][1000 genomes]
rs6753773	1.00[EUR][1000 genomes]
rs73934731	1.00[EUR][1000 genomes]
rs73937816	1.00[EUR][1000 genomes]
rs73937817	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7596703	1.00[EUR][1000 genomes]
rs7607974	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417336	chr2:62957866-63749654	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv1800788	chr2:63473443-63900292	ZNF genes & repeats Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv874235	chr2:63622470-63709708	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63631800-63688000	Weak transcription	Right Ventricle	heart
2	chr2:63662000-63698000	Weak transcription	Ovary	ovary
3	chr2:63662800-63688000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr2:63666400-63688000	Weak transcription	Primary B cells from cord blood	blood
5	chr2:63666600-63726800	Weak transcription	Gastric	stomach
6	chr2:63668200-63684800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:63673600-63697800	Weak transcription	Left Ventricle	heart
8	chr2:63674400-63693200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr2:63675800-63712000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr2:63680400-63698400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr2:63680600-63685000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr2:63680600-63705800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr2:63680800-63686800	Weak transcription	Lung	lung
14	chr2:63681400-63688800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
15	chr2:63681600-63685800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr2:63681600-63717800	Weak transcription	Aorta	Aorta
17	chr2:63682000-63686600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr2:63682200-63687800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr2:63682200-63688200	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr2:63682400-63685800	Weak transcription	Adipose Nuclei	Adipose
21	chr2:63682400-63686000	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr2:63682400-63686800	Weak transcription	Fetal Brain Male	brain
23	chr2:63682400-63688600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr2:63682400-63717600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr2:63683000-63687800	Weak transcription	Duodenum Mucosa	Duodenum
26	chr2:63683200-63684200	ZNF genes & repeats	Fetal Stomach	stomach
27	chr2:63683400-63712800	Weak transcription	Fetal Thymus	thymus
28	chr2:63683600-63688000	Weak transcription	Primary T helper cells PMA-I stimulated	--

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